Detailed information NTG0477257

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: J1G53_RS00920
• Genome accession: NZ_CP071490
• Coordinates: 183232..184428 (+)
• Length: 398 a.a.
• NCBI ID: WP_160434283.1
• Uniprot ID: -
• Organism: Glaesserella parasuis strain GHP1808
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 178232..189428

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J1G53_RS00900 (J1G53_00900)	radA/sms	178847..180223 (-)	1377	WP_021114521.1	DNA repair protein RadA	Machinery gene
J1G53_RS00905 (J1G53_00905)	pilA	180411..180863 (+)	453	WP_010787008.1	pilin	Machinery gene
J1G53_RS00910 (J1G53_00910)	-	181136..181501 (+)	366	WP_015940027.1	endonuclease domain-containing protein	-
J1G53_RS00915 (J1G53_00915)	pilB	181854..183239 (+)	1386	WP_207342514.1	GspE/PulE family protein	Machinery gene
J1G53_RS00920 (J1G53_00920)	pilC	183232..184428 (+)	1197	WP_160434283.1	type II secretion system F family protein	Machinery gene
J1G53_RS00925 (J1G53_00925)	-	184425..185093 (+)	669	WP_207342515.1	prepilin peptidase	-
J1G53_RS00930 (J1G53_00930)	dapE	185177..186310 (+)	1134	WP_005711772.1	succinyl-diaminopimelate desuccinylase	-
J1G53_RS00935 (J1G53_00935)	clpX	186384..187634 (-)	1251	WP_160429045.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
J1G53_RS00940 (J1G53_00940)	clpP	187641..188222 (-)	582	WP_010787003.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	-
J1G53_RS00945 (J1G53_00945)	-	188323..188712 (+)	390	WP_005711765.1	SufE family protein	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 45560.34 Da
• Isoelectric Point: 10.0612

>NTDB_id=477257 J1G53_RS00920 WP_160434283.1 183232..184428(+) (pilC) [Glaesserella parasuis strain GHP1808]
MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKLLQQKGYSQLRISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFEKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSNFLQHSILTLIILCVLCFLLIHILNKKTDL
IKRLKFIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQGSLATTLTYLKQGYRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISNGYQQRLDYQIDILSQLLEPMLIVLMGIIVGTILVGLYLPIFDMGAMIE

Nucleotide

• Length: 1197 bp

>NTDB_id=477257 J1G53_RS00920 WP_160434283.1 183232..184428(+) (pilC) [Glaesserella parasuis strain GHP1808]
ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGACAAAAGCAAACAGGGCGACAGCTTGCCGAAAG
CCGAGAAGTGCTAGAAAAACTCTTGCAACAAAAAGGCTATAGCCAGTTACGCATTAGCCGACATTTTGCCTTGCCGACGG
CACCGAAAAAGGAAGAAATAAATCAATTTATGCAACAGTTGGCATTATTAATTCAAGCAAAAATCCCCCTAAAACAGAGT
TTGGTAATGTTGCTGGAAACTTGCCAAAATCGCACCTTTTACCGTTGGCAACAAGAGACAATCCGCTTGATTGAAGCTGG
CTTTGCCTTATCCGTTGCCTTTGAAAAACAGGGGAAATATATCAATCCACAAGAGATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTGATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTACTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGCTCAAAAGGAAAATCATTACCTTTAATTACCGAAATACTCTTTAGCCTATCCAATTTTCTAC
AACACTCTATTTTAACGCTAATTATTTTATGTGTGTTATGTTTTCTATTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTAAACGCCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAAGGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGTTATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCAACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATAGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGGTTATATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

• Type II secretion system (T2SS), protein F (T2SSF) (63-186)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	98.492	100	0.985
pilC	Haemophilus influenzae Rd KW20	38.404	100	0.387
pilC	Haemophilus influenzae 86-028NP	38.155	100	0.384