Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   J1G53_RS00900 Genome accession   NZ_CP071490
Coordinates   178847..180223 (-) Length   458 a.a.
NCBI ID   WP_021114521.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1808     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 173847..185223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G53_RS00880 (J1G53_00880) - 174558..176012 (-) 1455 WP_075592682.1 aminoacyl-histidine dipeptidase -
  J1G53_RS00885 (J1G53_00885) gpt 176193..176672 (+) 480 WP_010787011.1 xanthine phosphoribosyltransferase -
  J1G53_RS00890 (J1G53_00890) - 177128..178099 (+) 972 WP_012621529.1 IS110 family transposase -
  J1G53_RS00895 (J1G53_00895) gmk 178168..178794 (+) 627 WP_010787010.1 guanylate kinase -
  J1G53_RS00900 (J1G53_00900) radA/sms 178847..180223 (-) 1377 WP_021114521.1 DNA repair protein RadA Machinery gene
  J1G53_RS00905 (J1G53_00905) pilA 180411..180863 (+) 453 WP_010787008.1 pilin Machinery gene
  J1G53_RS00910 (J1G53_00910) - 181136..181501 (+) 366 WP_015940027.1 endonuclease domain-containing protein -
  J1G53_RS00915 (J1G53_00915) pilB 181854..183239 (+) 1386 WP_207342514.1 GspE/PulE family protein Machinery gene
  J1G53_RS00920 (J1G53_00920) pilC 183232..184428 (+) 1197 WP_160434283.1 type II secretion system F family protein Machinery gene
  J1G53_RS00925 (J1G53_00925) - 184425..185093 (+) 669 WP_207342515.1 prepilin peptidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49490.12 Da        Isoelectric Point: 7.6964

>NTDB_id=477254 J1G53_RS00900 WP_021114521.1 178847..180223(-) (radA/sms) [Glaesserella parasuis strain GHP1808]
MAKAPKTAYVCSDCGAEYARWMGQCKACLAWNTISEVRLISAKESKSDRLSGYAGETTGKIQRLSDIDLQEVPRFSSGFY
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLSQSVPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHI
CNLADQEKPKLMVIDSIQVMHLADIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGEADSRYRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKAIKGMEVFTVKKLSDALDIVNDL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=477254 J1G53_RS00900 WP_021114521.1 178847..180223(-) (radA/sms) [Glaesserella parasuis strain GHP1808]
ATGGCAAAAGCACCAAAAACCGCTTATGTATGTAGTGATTGTGGCGCGGAATATGCTCGTTGGATGGGGCAATGTAAGGC
GTGTTTAGCGTGGAACACCATTAGCGAAGTCCGTCTGATTTCGGCAAAAGAGAGCAAAAGTGACCGCTTGAGTGGCTATG
CAGGGGAAACGACAGGCAAAATTCAGCGATTGTCTGACATTGATTTGCAGGAAGTGCCACGTTTTAGCAGTGGTTTTTAT
GAACTAGACCGTGTGCTGGGGGGCGGTATTGTACCCGGCAGTGCGATTTTGATCGGCGGACACCCAGGGGCAGGGAAAAG
TACCTTGCTCTTGCAAGTGATGTGCGGTTTGTCGCAAAGTGTGCCAACCCTTTATGTGACTGGAGAAGAGTCGTTACAAC
AGGTGGCAATGCGAGCTAACCGTTTGGGCTTGCCGACGGATAATCTAAAAATGTTATCTGAAACCTCAGTCGAACATATT
TGTAACCTTGCCGATCAGGAAAAACCCAAACTGATGGTGATTGACTCTATTCAAGTAATGCACCTTGCGGATATTCAATC
TTCCCCTGGCAGTGTGGCTCAAGTGCGTGAATGTGCGGCATTTTTGACACGTTATGCCAAAACACGTCAAGTGGCGATTA
TTATGGTCGGCCACGTTACGAAAGATGGAACTTTAGCAGGCCCTAAAGTGCTAGAACACGCCATTGACGCTTCGCTGTTA
TTGGAAGGGGAGGCGGACTCGCGTTATCGTACCTTACGCAGTCAGAAAAACCGTTTCGGAGCAGTGAACGAACTCGGCGT
ATTTGCAATGACAGAACAAGGCTTAAAAGAAGTGAAGAACCCTTCGGCGATCTTCTTAAGCCGTAGCGAAGAACAGACTT
CAGGCAGTTCGGTGATGGTATTATGGGAAGGCACTCGTCCGTTGTTGGTAGAAATTCAAGCATTGGTCGATCACTCAATG
CTTGCCAACCCTCGCCGTGTTGCGGTGGGGCTAGAACAGAACCGTTTATCGCTGTTACTTGCGGTGTTACATCGACACGG
TGGCTTGCAAATGTCTGATCAAGATGTGTTTGTGAATGTGGTCGGTGGGGTAAAAGTCACGGAAACCAGTGCCGACCTAG
CTTTATTGCTGGCATTAATTTCGAGCTTTCGCAACCGTCCTTTACCGCAAGATTTGGTGGTCTTTGGCGAAGTTGGTTTA
GCAGGGGAAATCCGCCCTGTGCCAAGCGGACAAGAGCGAATTAGTGAAGCAGCAAAACACGGCTTTAAACGCGCGATCAT
TCCTCACGGCAACGCTCCGAAAAAAGCAATTAAGGGAATGGAAGTCTTTACCGTGAAGAAATTAAGTGATGCGTTGGATA
TTGTGAATGATCTATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

AAA domain (AAA_25)

(84-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.692

99.345

0.474
  radA Streptococcus mitis NCTC 12261

44.592

98.908

0.441
  radA Streptococcus mitis SK321

44.371

98.908

0.439
  radA Streptococcus pneumoniae Rx1

45.688

93.668

0.428
  radA Streptococcus pneumoniae D39

45.688

93.668

0.428
  radA Streptococcus pneumoniae R6

45.688

93.668

0.428
  radA Streptococcus pneumoniae TIGR4

45.688

93.668

0.428