Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   J1G53_RS00935 Genome accession   NZ_CP071490
Coordinates   186384..187634 (-) Length   416 a.a.
NCBI ID   WP_160429045.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GHP1808     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 181384..192634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G53_RS00915 (J1G53_00915) pilB 181854..183239 (+) 1386 WP_207342514.1 GspE/PulE family protein Machinery gene
  J1G53_RS00920 (J1G53_00920) pilC 183232..184428 (+) 1197 WP_160434283.1 type II secretion system F family protein Machinery gene
  J1G53_RS00925 (J1G53_00925) - 184425..185093 (+) 669 WP_207342515.1 prepilin peptidase -
  J1G53_RS00930 (J1G53_00930) dapE 185177..186310 (+) 1134 WP_005711772.1 succinyl-diaminopimelate desuccinylase -
  J1G53_RS00935 (J1G53_00935) clpX 186384..187634 (-) 1251 WP_160429045.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  J1G53_RS00940 (J1G53_00940) clpP 187641..188222 (-) 582 WP_010787003.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  J1G53_RS00945 (J1G53_00945) - 188323..188712 (+) 390 WP_005711765.1 SufE family protein -
  J1G53_RS00950 (J1G53_00950) - 188790..189452 (-) 663 WP_279428553.1 SLC13 family permease -
  J1G53_RS00955 (J1G53_00955) - 189921..190541 (+) 621 WP_015940024.1 L-threonylcarbamoyladenylate synthase -
  J1G53_RS00960 (J1G53_00960) rluB 190709..191728 (+) 1020 WP_015940023.1 23S rRNA pseudouridine(2605) synthase RluB -
  J1G53_RS12075 - 191799..191945 (+) 147 WP_010786526.1 helix-turn-helix domain-containing protein -
  J1G53_RS11730 - 192041..192304 (+) 264 Protein_181 transposase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45805.51 Da        Isoelectric Point: 5.2866

>NTDB_id=477258 J1G53_RS00935 WP_160429045.1 186384..187634(-) (clpX) [Glaesserella parasuis strain GHP1808]
MANFEKEPHCSFCGKRRNEVDALIEGTEGHICNECIEESYALINGTDELLIDANEAESQDVLGNVPTPHEIHAHLDDYVI
GQEHAKKVLSVAVYNHYKRLRNALSDNKESEGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVG
EDVENVIQKLLMKCDFDKDQAERGIIFIDEIDKITRKSENPSLTRDVSGEGVQQALLKLIEGTIANINPQGGRKHPKQET
IPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFKAELKKDKDRQALTELFKQVEPEDLVKFGLIPELIGRLPVITPLE
ELDEKALINILTEPKNAIIKQYQALFKMEGVELKFTKDALVAIAQKAISRKTGARGLRSIVENLLLDTMYDLPSLKASKV
TVSKNCVEKGEKPKVE

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=477258 J1G53_RS00935 WP_160429045.1 186384..187634(-) (clpX) [Glaesserella parasuis strain GHP1808]
ATGGCAAATTTTGAGAAAGAACCACATTGTAGTTTTTGTGGAAAGCGTCGTAATGAAGTCGATGCGTTAATTGAAGGTAC
AGAAGGACATATTTGTAACGAATGTATTGAAGAGTCTTATGCGTTAATTAATGGAACTGATGAGCTATTGATTGATGCAA
ATGAGGCTGAGAGCCAAGATGTGTTAGGTAATGTGCCTACTCCACATGAAATTCACGCACATTTAGATGATTATGTGATC
GGGCAAGAACACGCTAAAAAGGTGTTGTCGGTTGCGGTTTATAACCACTACAAACGCTTACGCAATGCACTGTCTGACAA
TAAAGAGAGTGAGGGCGTTGAGTTAGGTAAAAGTAACATTTTGCTTATCGGCCCGACAGGAAGTGGTAAAACATTGTTAG
CAGAAACCTTGGCACGCCGTTTAAATGTGCCTTTTGCTGTGGCTGATGCAACAACGCTGACGCAAGCAGGCTATGTGGGT
GAAGATGTTGAAAATGTGATCCAAAAATTGCTGATGAAGTGTGATTTTGATAAAGATCAGGCTGAACGTGGCATTATTTT
TATTGATGAAATCGACAAAATTACCCGTAAATCAGAAAATCCATCATTGACCCGTGATGTATCCGGTGAAGGGGTTCAGC
AAGCGTTGCTGAAATTGATTGAAGGCACTATTGCGAATATCAATCCACAGGGTGGACGCAAACACCCGAAACAAGAAACA
ATTCCAGTCGATACGTCTAAAATTCTCTTTATCTGCGGTGGTGCATTTGCTGGGCTAGATAAAATTGTCGAAGCTCGAAC
AAATACACAAGGCGGAATTGGCTTTAAAGCGGAATTGAAGAAAGATAAAGATCGTCAGGCACTCACTGAATTATTCAAAC
AAGTTGAGCCTGAAGATTTGGTAAAATTTGGTTTAATTCCCGAGTTAATCGGGCGTTTGCCTGTGATCACACCGCTTGAA
GAACTTGATGAAAAAGCACTTATTAACATTTTGACAGAGCCGAAAAATGCGATTATCAAGCAGTATCAAGCCTTATTCAA
AATGGAAGGTGTGGAGTTAAAATTCACCAAAGATGCTTTAGTGGCGATTGCTCAAAAAGCGATTTCTCGCAAAACAGGGG
CAAGGGGGCTACGTTCTATCGTGGAAAACTTGTTACTCGACACGATGTATGATTTACCATCATTGAAAGCAAGTAAAGTG
ACAGTGAGTAAAAACTGTGTTGAGAAAGGTGAAAAGCCGAAGGTGGAGTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(9-44)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(322-396)

AAA domain (Cdc48 subfamily) (AAA_2)

(117-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

55.961

98.798

0.553
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.167

98.077

0.531