Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J1G50_RS03080 Genome accession   NZ_CP071489
Coordinates   565009..566205 (-) Length   398 a.a.
NCBI ID   WP_160405118.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1815     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 560009..571205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G50_RS03055 (J1G50_03055) - 560725..561114 (-) 390 WP_010787002.1 SufE family protein -
  J1G50_RS03060 (J1G50_03060) clpP 561215..561796 (+) 582 WP_005711766.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  J1G50_RS03065 (J1G50_03065) clpX 561803..563053 (+) 1251 WP_160405112.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  J1G50_RS03070 (J1G50_03070) dapE 563127..564260 (-) 1134 WP_160405114.1 succinyl-diaminopimelate desuccinylase -
  J1G50_RS03075 (J1G50_03075) - 564344..565012 (-) 669 WP_160405116.1 prepilin peptidase -
  J1G50_RS03080 (J1G50_03080) pilC 565009..566205 (-) 1197 WP_160405118.1 type II secretion system F family protein Machinery gene
  J1G50_RS03085 (J1G50_03085) pilB 566198..567583 (-) 1386 WP_160405120.1 GspE/PulE family protein Machinery gene
  J1G50_RS03090 (J1G50_03090) pilA 567630..568094 (-) 465 WP_160405122.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  J1G50_RS03095 (J1G50_03095) radA/sms 568282..569658 (+) 1377 WP_005711784.1 DNA repair protein RadA Machinery gene
  J1G50_RS03100 (J1G50_03100) gmk 569711..570337 (-) 627 WP_071610761.1 guanylate kinase -
  J1G50_RS03105 (J1G50_03105) gpt 570575..571054 (-) 480 WP_005714020.1 xanthine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 45744.56 Da        Isoelectric Point: 10.1228

>NTDB_id=477204 J1G50_RS03080 WP_160405118.1 565009..566205(-) (pilC) [Glaesserella parasuis strain YHP1815]
MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKRLQQKGYSQLRISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFEKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSHFLQHSILTLIILCVLCFLLIHILNKKTDL
IKRLKFIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQRSLATTLTYLKQGYRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISDGYQQRLDYQIDILSQLLEPMLMVLMGIIVGTILVGLYLPIFDMGAMIE

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=477204 J1G50_RS03080 WP_160405118.1 565009..566205(-) (pilC) [Glaesserella parasuis strain YHP1815]
ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGACAAAAGCAAACAGGGCGACAGCTTGCCGAAAG
CCGAGAAGTGCTAGAAAAACGCTTGCAACAAAAAGGCTATAGCCAGTTACGCATTAGCCGACATTTTGCCTTGCCGACGG
CACCGAAAAAGGAAGAAATTAATCAATTTATGCAACAGTTGGCATTATTAATTCAAGCCAAAATCCCCCTAAAACAGAGT
TTGGTAATGTTGCTGGAAACTTGCCAAAATCGCACCTTTTACCGTTGGCAACAAGAGACAATCCGCTTGATTGAAGCTGG
CTTTGCCCTATCCGTTGCCTTTGAAAAACAGGGGAAATATATCAATCCACAAGAGATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTGATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTACTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGCTCAAAAGGAAAATCATTACCTTTAATTACCGAAATACTCTTTAGCCTATCTCATTTTCTAC
AACACTCTATTTTAACGCTAATTATTTTATGTGTGTTATGTTTTCTATTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTAAACGTCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAACGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGTTATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCGACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGTTTGTATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

99.246

100

0.992
  pilC Haemophilus influenzae 86-028NP

38.404

100

0.387
  pilC Haemophilus influenzae Rd KW20

38.404

100

0.387