Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   J1G50_RS03065 Genome accession   NZ_CP071489
Coordinates   561803..563053 (+) Length   416 a.a.
NCBI ID   WP_160405112.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1815     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 556803..568053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G50_RS03040 (J1G50_03040) rluB 557703..558722 (-) 1020 WP_021114514.1 23S rRNA pseudouridine(2605) synthase RluB -
  J1G50_RS03045 (J1G50_03045) - 558892..559512 (-) 621 WP_160405110.1 L-threonylcarbamoyladenylate synthase -
  J1G50_RS03050 (J1G50_03050) - 559987..560535 (+) 549 WP_234888270.1 SLC13 family permease -
  J1G50_RS03055 (J1G50_03055) - 560725..561114 (-) 390 WP_010787002.1 SufE family protein -
  J1G50_RS03060 (J1G50_03060) clpP 561215..561796 (+) 582 WP_005711766.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  J1G50_RS03065 (J1G50_03065) clpX 561803..563053 (+) 1251 WP_160405112.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  J1G50_RS03070 (J1G50_03070) dapE 563127..564260 (-) 1134 WP_160405114.1 succinyl-diaminopimelate desuccinylase -
  J1G50_RS03075 (J1G50_03075) - 564344..565012 (-) 669 WP_160405116.1 prepilin peptidase -
  J1G50_RS03080 (J1G50_03080) pilC 565009..566205 (-) 1197 WP_160405118.1 type II secretion system F family protein Machinery gene
  J1G50_RS03085 (J1G50_03085) pilB 566198..567583 (-) 1386 WP_160405120.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45762.48 Da        Isoelectric Point: 5.2890

>NTDB_id=477203 J1G50_RS03065 WP_160405112.1 561803..563053(+) (clpX) [Glaesserella parasuis strain YHP1815]
MANFEKEPHCSFCGKRRNEVDALIEGTEGHICNECIEESYALINGTDELLIDANEAESQDVLGNVPTPHEIHAHLDDYVI
GQEHAKKVLSVAVYNHYKRLRNALSDNKESEGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTEAGYVG
EDVENVIQKLLMKCDFDKDQAERGIIFIDEIDKITRKSENPSLTRDVSGEGVQQALLKLIEGTIANINPQGGRKHPKQET
IPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFKAELKKDKARQALTELFKQVEPEDLVKFGLIPELIGRLPVITPLE
ELDEKALINILTEPKNAIIKQYQALFKMESVELKFTKDALVAIAQKAISRKTGARGLRSIVENLLLDTMYDLPSLKASKV
TVGKNCVEKGEKPKVE

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=477203 J1G50_RS03065 WP_160405112.1 561803..563053(+) (clpX) [Glaesserella parasuis strain YHP1815]
ATGGCAAATTTTGAGAAAGAACCACATTGTAGTTTTTGTGGAAAGCGTCGTAATGAAGTCGATGCGTTAATTGAAGGTAC
AGAAGGACATATTTGTAACGAATGTATTGAAGAGTCTTATGCGTTAATTAATGGAACTGATGAGCTATTGATTGATGCAA
ATGAGGCTGAGAGCCAAGATGTGTTAGGTAATGTGCCTACTCCACATGAAATTCACGCACATTTAGATGATTATGTGATC
GGGCAAGAACACGCTAAAAAGGTGTTGTCGGTTGCGGTTTATAACCACTACAAACGCTTACGCAATGCACTTTCTGACAA
TAAAGAGAGTGAAGGCGTTGAGTTGGGTAAAAGTAACATTTTGCTTATCGGCCCGACAGGAAGTGGTAAAACATTGTTAG
CAGAAACCTTGGCACGCCGTTTAAATGTACCTTTTGCTGTGGCTGATGCAACAACGCTGACGGAAGCAGGCTATGTGGGT
GAAGATGTTGAAAATGTGATCCAAAAATTGCTGATGAAGTGTGATTTTGATAAAGATCAGGCTGAACGTGGCATTATTTT
TATTGATGAAATCGACAAAATTACCCGTAAATCAGAAAATCCATCATTGACCCGTGATGTATCAGGTGAAGGGGTTCAGC
AGGCATTACTTAAATTGATTGAAGGTACTATCGCGAATATCAATCCACAAGGCGGACGCAAACACCCGAAACAAGAAACA
ATCCCAGTTGATACCTCTAAAATTCTCTTTATCTGTGGCGGTGCATTTGCAGGGCTAGATAAAATTGTCGAAGCTCGAAC
GAATACACAAGGTGGAATTGGCTTTAAAGCAGAATTGAAAAAAGATAAAGCTCGTCAAGCACTCACTGAATTATTCAAAC
AAGTTGAACCTGAAGATTTGGTAAAATTTGGTTTAATTCCAGAGCTAATCGGGCGTTTGCCTGTTATCACACCGCTTGAA
GAACTTGATGAGAAAGCACTTATTAACATTTTGACAGAACCGAAAAACGCGATTATCAAGCAGTATCAAGCCTTGTTCAA
AATGGAAAGTGTGGAATTAAAATTCACCAAAGATGCTTTAGTGGCGATTGCTCAAAAAGCGATTTCTCGTAAAACAGGGG
CAAGGGGGCTACGTTCAATCGTGGAAAACTTGCTACTTGACACTATGTATGATTTACCGTCCTTGAAAGCAAGTAAAGTG
ACAGTAGGTAAAAACTGTGTTGAGAAAGGTGAAAAGCCGAAGGTGGAGTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(322-396)

ClpX C4-type zinc finger (zf-C4_ClpX)

(9-44)

AAA domain (Cdc48 subfamily) (AAA_2)

(117-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

55.718

98.798

0.55
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.412

98.077

0.534