Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   J1G50_RS03095 Genome accession   NZ_CP071489
Coordinates   568282..569658 (+) Length   458 a.a.
NCBI ID   WP_005711784.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1815     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 563282..574658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G50_RS03075 (J1G50_03075) - 564344..565012 (-) 669 WP_160405116.1 prepilin peptidase -
  J1G50_RS03080 (J1G50_03080) pilC 565009..566205 (-) 1197 WP_160405118.1 type II secretion system F family protein Machinery gene
  J1G50_RS03085 (J1G50_03085) pilB 566198..567583 (-) 1386 WP_160405120.1 GspE/PulE family protein Machinery gene
  J1G50_RS03090 (J1G50_03090) pilA 567630..568094 (-) 465 WP_160405122.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  J1G50_RS03095 (J1G50_03095) radA/sms 568282..569658 (+) 1377 WP_005711784.1 DNA repair protein RadA Machinery gene
  J1G50_RS03100 (J1G50_03100) gmk 569711..570337 (-) 627 WP_071610761.1 guanylate kinase -
  J1G50_RS03105 (J1G50_03105) gpt 570575..571054 (-) 480 WP_005714020.1 xanthine phosphoribosyltransferase -
  J1G50_RS03110 (J1G50_03110) - 571234..572688 (+) 1455 WP_062924312.1 aminoacyl-histidine dipeptidase -
  J1G50_RS03115 (J1G50_03115) - 572732..573406 (-) 675 WP_042906651.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  J1G50_RS03120 (J1G50_03120) - 573601..574389 (-) 789 WP_234888237.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49531.18 Da        Isoelectric Point: 7.6964

>NTDB_id=477207 J1G50_RS03095 WP_005711784.1 568282..569658(+) (radA/sms) [Glaesserella parasuis strain YHP1815]
MAKAPKTAYVCNDCGAEYARWMGQCKACLAWNTISEVRLISAKESKSDRLSGYAGETTGKIQRLSEIDLQEVPRFSSGFY
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLSQSVPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHI
CNLADQEKPKLMVIDSIQVMHLADIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGEADSRYRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKAIKGMEVFTVKKLSDALDIVNDL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=477207 J1G50_RS03095 WP_005711784.1 568282..569658(+) (radA/sms) [Glaesserella parasuis strain YHP1815]
ATGGCAAAAGCACCAAAAACTGCGTATGTATGTAATGATTGTGGCGCGGAATATGCTCGTTGGATGGGACAGTGTAAGGC
GTGTTTAGCGTGGAACACCATTAGCGAAGTCCGTCTGATTTCGGCAAAAGAGAGTAAAAGTGATCGCTTGAGTGGCTATG
CAGGGGAAACGACAGGCAAAATTCAGCGGCTGTCTGAAATTGATTTGCAGGAAGTGCCTCGTTTTAGCAGTGGTTTTTAT
GAGCTAGATCGTGTGCTAGGGGGCGGTATTGTACCTGGTAGTGCGATTTTGATCGGCGGACACCCTGGCGCAGGGAAAAG
TACCTTGCTCTTGCAGGTAATGTGCGGTTTATCACAAAGTGTGCCGACCCTTTATGTGACGGGGGAAGAGTCGCTACAAC
AGGTGGCAATGCGTGCTAACCGCTTGGGCTTGCCGACGGATAATCTAAAAATGTTATCTGAAACCTCAGTCGAACATATT
TGTAACCTTGCCGATCAGGAAAAACCCAAACTGATGGTGATTGACTCTATTCAAGTAATGCACCTTGCGGATATTCAATC
TTCCCCTGGCAGTGTGGCTCAAGTGCGTGAATGTGCGGCATTTTTGACACGTTATGCCAAAACACGTCAAGTGGCGATTA
TTATGGTCGGGCACGTTACGAAAGATGGAACTTTAGCAGGCCCTAAAGTGCTAGAACACGCCATTGACGCTTCGCTGTTA
TTGGAAGGGGAGGCGGACTCGCGTTATCGTACCTTACGCAGTCAGAAAAACCGTTTCGGAGCAGTGAACGAACTCGGCGT
ATTTGCAATGACAGAACAAGGCTTAAAAGAAGTGAAGAACCCTTCGGCGATCTTCTTAAGCCGTAGCGAAGAACAGACTT
CAGGCAGTTCGGTGATGGTATTATGGGAAGGCACTCGTCCGTTGTTGGTAGAAATTCAAGCATTGGTCGATCACTCAATG
CTTGCCAACCCTCGCCGTGTTGCGGTGGGGCTAGAACAGAACCGCTTATCACTGTTGCTTGCAGTGTTACATCGACACGG
TGGCTTGCAAATGTCTGACCAAGATGTGTTTGTGAATGTGGTCGGCGGTGTAAAAGTCACTGAAACCAGTGCCGACTTAG
CTCTATTACTGGCACTCATTTCTAGCTTCCGCAATCGTCCGTTACCGCAAGATTTGGTGGTCTTTGGCGAAGTTGGTTTA
GCAGGGGAAATTCGCCCTGTGCCAAGCGGACAAGAGCGAATTAGTGAAGCGGCAAAACACGGCTTTAAGCGTGCGATCAT
TCCTCACGGCAACGCCCCGAAAAAAGCGATTAAGGGAATGGAAGTCTTTACCGTGAAGAAATTAAGTGATGCGTTGGATA
TTGTGAATGATCTATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

AAA domain (AAA_25)

(84-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.692

99.345

0.474
  radA Streptococcus mitis NCTC 12261

44.812

98.908

0.443
  radA Streptococcus mitis SK321

44.592

98.908

0.441
  radA Streptococcus pneumoniae Rx1

45.921

93.668

0.43
  radA Streptococcus pneumoniae D39

45.921

93.668

0.43
  radA Streptococcus pneumoniae R6

45.921

93.668

0.43
  radA Streptococcus pneumoniae TIGR4

45.921

93.668

0.43