Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   H7792_RS01455 Genome accession   NZ_CP060643
Coordinates   269877..270428 (+) Length   183 a.a.
NCBI ID   WP_080011078.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY416     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 264877..275428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7792_RS01455 (H7792_01460) comX/sigX/comX2/sigX2 269877..270428 (+) 552 WP_080011078.1 sigma-70 family RNA polymerase sigma factor Regulator
  H7792_RS01460 (H7792_01465) truA 270613..271362 (+) 750 WP_002988132.1 tRNA pseudouridine(38-40) synthase TruA -
  H7792_RS01465 (H7792_01470) - 271352..272116 (+) 765 WP_002988136.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  H7792_RS01470 (H7792_01475) - 272106..272576 (+) 471 WP_002988139.1 ECF transporter S component -
  H7792_RS01475 (H7792_01480) - 272590..273150 (+) 561 WP_014407836.1 TIGR01440 family protein -
  H7792_RS01480 (H7792_01485) - 273215..274060 (-) 846 WP_002982833.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22228.03 Da        Isoelectric Point: 9.8369

>NTDB_id=477191 H7792_RS01455 WP_080011078.1 269877..270428(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain TSPY416]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
CFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=477191 H7792_RS01455 WP_080011078.1 269877..270428(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain TSPY416]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
TGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.