Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   J1F34_RS08305 Genome accession   NZ_CP071441
Coordinates   1758552..1759289 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EcPF20     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1753552..1764289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1F34_RS08290 (J1F34_08290) clpC 1754006..1756579 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  J1F34_RS08295 (J1F34_08295) yfiH 1756709..1757440 (-) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  J1F34_RS08300 (J1F34_08300) rluD 1757437..1758417 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J1F34_RS08305 (J1F34_08305) comL 1758552..1759289 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  J1F34_RS08310 (J1F34_08310) raiA 1759560..1759901 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  J1F34_RS08315 (J1F34_08315) pheL 1760005..1760052 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  J1F34_RS08320 (J1F34_08320) pheA 1760151..1761311 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  J1F34_RS08325 (J1F34_08325) tyrA 1761354..1762475 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  J1F34_RS08330 (J1F34_08330) aroF 1762486..1763556 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  J1F34_RS08335 (J1F34_08335) yfiL 1763766..1764131 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=476988 J1F34_RS08305 WP_000197686.1 1758552..1759289(+) (comL) [Escherichia coli strain EcPF20]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=476988 J1F34_RS08305 WP_000197686.1 1758552..1759289(+) (comL) [Escherichia coli strain EcPF20]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376