Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HUG14_RS06830 Genome accession   NZ_CP060580
Coordinates   1378534..1379133 (-) Length   199 a.a.
NCBI ID   WP_104143421.1    Uniprot ID   -
Organism   Lactococcus lactis strain K_LL005     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1373534..1384133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUG14_RS06820 (HUG14_06820) acnA 1374662..1377208 (+) 2547 WP_187398200.1 aconitate hydratase AcnA -
  HUG14_RS06825 (HUG14_06825) icd 1377229..1378467 (+) 1239 WP_187398201.1 NADP-dependent isocitrate dehydrogenase -
  HUG14_RS06830 (HUG14_06830) clpP 1378534..1379133 (-) 600 WP_104143421.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HUG14_RS06835 (HUG14_06835) - 1379330..1379860 (+) 531 WP_003129594.1 hypothetical protein -
  HUG14_RS06840 (HUG14_06840) spx 1380020..1380418 (+) 399 WP_003129597.1 transcriptional regulator Spx -
  HUG14_RS06845 (HUG14_06845) - 1380800..1381963 (-) 1164 WP_187398202.1 DUF998 domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22096.31 Da        Isoelectric Point: 4.8819

>NTDB_id=476662 HUG14_RS06830 WP_104143421.1 1378534..1379133(-) (clpP) [Lactococcus lactis strain K_LL005]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGPVEDGMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGMAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGTGQGTQQTDMAIVAEQLLKTRKRLEQILADN
SKRSLEQIHKDAERDHWMDAKETLEYGFIDEIMENNSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=476662 HUG14_RS06830 WP_104143421.1 1378534..1379133(-) (clpP) [Lactococcus lactis strain K_LL005]
ATGGGTTATTTAGTACCTACCGTTATTGAACAATCAAGCCGTGGCGAACGTGCTTATGATATTTATTCACGACTTTTAAA
AGACCGCATTATCATGCTGACAGGACCTGTTGAAGATGGAATGGCAAATTCTATCATTGCACAACTTCTTTTCTTGGACG
CACAAGATAACACTAAAGATATTTATCTCTACGTAAATACACCTGGTGGTTCTGTATCTGCTGGTCTTGCCATTGTTGAT
ACAATGAATTTTATCAAATCAGATGTTCAAACTATCGTTATGGGAATGGCTGCCTCTATGGGAACAATCATTGCCTCAAG
CGGAACAAAAGGCAAACGATTCATGTTGCCAAATGCTGAATATCTTATTCACCAACCAATGGGTGGTACAGGTCAAGGCA
CTCAACAAACTGATATGGCTATTGTTGCTGAGCAACTTTTGAAAACTCGTAAACGTTTGGAACAAATTCTTGCTGATAAT
TCCAAACGTTCACTTGAACAAATTCACAAAGATGCCGAACGTGACCATTGGATGGATGCCAAAGAAACTTTGGAATATGG
TTTCATCGATGAAATTATGGAAAATAATTCCTTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

99.497

100

0.995
  clpP Lactococcus lactis subsp. cremoris KW2

98.995

100

0.99
  clpP Streptococcus mutans UA159

87.755

98.492

0.864
  clpP Streptococcus thermophilus LMD-9

87.245

98.492

0.859
  clpP Streptococcus thermophilus LMG 18311

87.245

98.492

0.859
  clpP Streptococcus pyogenes MGAS315

86.224

98.492

0.849
  clpP Streptococcus pyogenes JRS4

86.224

98.492

0.849
  clpP Streptococcus pneumoniae D39

84.694

98.492

0.834
  clpP Streptococcus pneumoniae TIGR4

84.694

98.492

0.834
  clpP Streptococcus pneumoniae R6

84.694

98.492

0.834
  clpP Streptococcus pneumoniae Rx1

84.694

98.492

0.834
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

96.985

0.553
  clpP Bacillus subtilis subsp. subtilis str. 168

57.368

95.477

0.548