Detailed information NTG0476615

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: ATM22_RS08930
• Genome accession: NZ_CP060528
• Coordinates: 1878495..1878965 (-)
• Length: 156 a.a.
• NCBI ID: WP_002493401.1
• Uniprot ID: -
• Organism: Staphylococcus epidermidis strain LM087
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1873495..1883965

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ATM22_RS08875 (ATM22_08810)	-	1873706..1874158 (-)	453	WP_002493388.1	hypothetical protein	-
ATM22_RS08880 (ATM22_08815)	rinB	1874306..1874476 (-)	171	WP_002493390.1	transcriptional activator RinB	-
ATM22_RS08885 (ATM22_08820)	-	1874482..1874694 (-)	213	WP_002493391.1	DUF1381 domain-containing protein	-
ATM22_RS08890 (ATM22_08825)	-	1874734..1875261 (-)	528	WP_002493392.1	dUTP diphosphatase	-
ATM22_RS08895 (ATM22_08830)	-	1875262..1875468 (-)	207	WP_002493393.1	hypothetical protein	-
ATM22_RS08900 (ATM22_08835)	-	1875461..1875805 (-)	345	WP_002493394.1	hypothetical protein	-
ATM22_RS08905 (ATM22_08840)	-	1875847..1876110 (-)	264	WP_002493395.1	hypothetical protein	-
ATM22_RS12020 (ATM22_08845)	-	1876100..1876309 (-)	210	WP_002493396.1	hypothetical protein	-
ATM22_RS08910 (ATM22_08850)	-	1876299..1876775 (-)	477	WP_002493397.1	DUF3310 domain-containing protein	-
ATM22_RS08915 (ATM22_08855)	-	1876772..1877131 (-)	360	WP_002493398.1	SA1788 family PVL leukocidin-associated protein	-
ATM22_RS08920 (ATM22_08860)	-	1877132..1877539 (-)	408	WP_002493399.1	RusA family crossover junction endodeoxyribonuclease	-
ATM22_RS08925 (ATM22_08865)	-	1877578..1878465 (-)	888	WP_002493400.1	DnaD domain-containing protein	-
ATM22_RS08930 (ATM22_08870)	ssbA	1878495..1878965 (-)	471	WP_002493401.1	single-stranded DNA-binding protein	Machinery gene
ATM22_RS08935 (ATM22_08875)	-	1878966..1879595 (-)	630	WP_332829396.1	MBL fold metallo-hydrolase	-
ATM22_RS08940 (ATM22_08880)	-	1879664..1880599 (-)	936	WP_002493403.1	recombinase RecT	-
ATM22_RS08945 (ATM22_08885)	-	1880601..1882553 (-)	1953	WP_002493404.1	AAA family ATPase	-
ATM22_RS08950	-	1882622..1882798 (-)	177	WP_002493405.1	hypothetical protein	-
ATM22_RS08955 (ATM22_08890)	-	1882864..1883073 (-)	210	WP_001830281.1	hypothetical protein	-
ATM22_RS08960 (ATM22_08895)	-	1883086..1883805 (-)	720	WP_002493406.1	phage repressor protein	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17451.15 Da
• Isoelectric Point: 4.7719

>NTDB_id=476615 ATM22_RS08930 WP_002493401.1 1878495..1878965(-) (ssbA) [Staphylococcus epidermidis strain LM087]
MINRVVLVGRLTKDPEFRTTPNGVEVTNFTLAINRNFTNAQGEREADFINVITFRKQAVNVNEYLSKGKLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNSNGGQQDSYQQQTRAQQGQSRQQSNEPVGDNPFANANGPIDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=476615 ATM22_RS08930 WP_002493401.1 1878495..1878965(-) (ssbA) [Staphylococcus epidermidis strain LM087]
ATGATTAATAGAGTTGTATTAGTAGGAAGATTGACAAAAGATCCAGAGTTTAGAACTACGCCTAACGGTGTTGAAGTAAC
AAACTTCACACTAGCGATTAATCGTAATTTTACGAACGCACAAGGCGAACGTGAAGCAGATTTTATAAACGTTATAACTT
TCAGAAAGCAAGCTGTAAATGTAAACGAGTATTTATCTAAAGGAAAATTAGCAGGCGTTGATGGTCGTATTCAATCACGC
AGCTATGAAAATCAAGAAGGTCGTCGAATATTTGTGACTGAAGTTGTCGCAGATAGCGTTCAATTTCTTGAACCTAAAAA
TTCAAATGGTGGCCAACAAGACTCTTATCAACAACAAACAAGAGCTCAGCAAGGACAAAGCAGACAACAAAGCAATGAAC
CGGTTGGGGATAACCCGTTTGCAAACGCTAATGGTCCAATTGATATTAGTGATGACGATTTACCATTTTAA

Domains

Predicted by InterProScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	58.382	100	0.647
ssb	Latilactobacillus sakei subsp. sakei 23K	50	100	0.545
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.547	67.949	0.391
ssb	Neisseria meningitidis MC58	34.104	100	0.378
ssb	Neisseria gonorrhoeae MS11	34.104	100	0.378
ssb	Vibrio cholerae strain A1552	33.908	100	0.378
ssb	Glaesserella parasuis strain SC1401	33.333	100	0.378