NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	H7F24_RS01960	Genome accession	NZ_CP060290
Coordinates	356653..357249 (+)	Length	198 a.a.
NCBI ID	WP_024427684.1	Uniprot ID	-
Organism	Bacillus sp. PAMC22265
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 351653..362249

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7F24_RS01935 (H7F24_01935)	opp1B	351832..352761 (-)	930	WP_024423539.1	nickel/cobalt ABC transporter permease	-
H7F24_RS01940 (H7F24_01940)	nikA	352777..354417 (-)	1641	WP_122631948.1	nickel ABC transporter substrate-binding protein	-
H7F24_RS01945 (H7F24_01945)	-	354537..355706 (-)	1170	WP_185853862.1	macrolide family glycosyltransferase	-
H7F24_RS01950 (H7F24_01950)	-	355935..356117 (+)	183	WP_185853863.1	hypothetical protein	-
H7F24_RS01960 (H7F24_01960)	clpP	356653..357249 (+)	597	WP_024427684.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
H7F24_RS01965 (H7F24_01965)	-	357310..357888 (-)	579	WP_041107909.1	TIGR00730 family Rossman fold protein	-
H7F24_RS01970 (H7F24_01970)	-	358026..358367 (+)	342	WP_044333970.1	MazG nucleotide pyrophosphohydrolase domain-containing protein	-
H7F24_RS01975 (H7F24_01975)	-	358395..360017 (-)	1623	WP_185853864.1	SulP family inorganic anion transporter	-
H7F24_RS01980 (H7F24_01980)	-	360055..360636 (-)	582	WP_185853865.1	beta-class carbonic anhydrase	-
H7F24_RS01985 (H7F24_01985)	-	361190..362167 (+)	978	WP_073207521.1	2-hydroxyacid dehydrogenase	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21832.00 Da Isoelectric Point: 4.6835

                                >NTDB_id=475424 H7F24_RS01960 WP_024427684.1 356653..357249(+) (clpP) [Bacillus sp. PAMC22265]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ

PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNTEDQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=475424 H7F24_RS01960 WP_024427684.1 356653..357249(+) (clpP) [Bacillus sp. PAMC22265]

ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA

CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG

AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCAATCACAGCTGGTATGGCCATTTATGATACG

ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG

TGAAAAAGGTAAGCGTTATGCTCTTCCAAACAGTGAAGTCATGATTCACCAACCACTCGGCGGTGCCCAAGGTCAAGCAA

CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG

CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA

CAAAGTCTTGACCCGTAATACAGAAGACCAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	93.939	100	0.939
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.539	96.465	0.652
clpP	Streptococcus thermophilus LMG 18311	58.549	97.475	0.571
clpP	Streptococcus thermophilus LMD-9	58.549	97.475	0.571
clpP	Lactococcus lactis subsp. cremoris KW2	56.186	97.98	0.551
clpP	Streptococcus pneumoniae Rx1	55.67	97.98	0.545
clpP	Streptococcus pneumoniae D39	55.67	97.98	0.545
clpP	Streptococcus pneumoniae R6	55.67	97.98	0.545
clpP	Streptococcus pneumoniae TIGR4	55.67	97.98	0.545
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Streptococcus mutans UA159	54.639	97.98	0.535
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.124	97.98	0.53

Detailed information NTG0475424