Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JR892_RS05620 Genome accession   NZ_CP070914
Coordinates   1167433..1168170 (-) Length   245 a.a.
NCBI ID   WP_205900164.1    Uniprot ID   -
Organism   Escherichia coli strain 65COLEC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1162433..1173170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR892_RS05590 (JR892_05590) yfiL 1162591..1162956 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  JR892_RS05595 (JR892_05595) aroF 1163166..1164236 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JR892_RS05600 (JR892_05600) tyrA 1164247..1165368 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JR892_RS05605 (JR892_05605) pheA 1165411..1166571 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  JR892_RS05610 (JR892_05610) pheL 1166670..1166717 (-) 48 WP_010723158.1 phe operon leader peptide -
  JR892_RS05615 (JR892_05615) raiA 1166821..1167162 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JR892_RS05620 (JR892_05620) comL 1167433..1168170 (-) 738 WP_205900164.1 outer membrane protein assembly factor BamD Machinery gene
  JR892_RS05625 (JR892_05625) rluD 1168305..1169285 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JR892_RS05630 (JR892_05630) yfiH 1169282..1170013 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  JR892_RS05635 (JR892_05635) clpC 1170143..1172716 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27859.38 Da        Isoelectric Point: 5.8539

>NTDB_id=474955 JR892_RS05620 WP_205900164.1 1167433..1168170(-) (comL) [Escherichia coli strain 65COLEC]
MTRMKYLVAAATLSLFLAGCSGSKEEEPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=474955 JR892_RS05620 WP_205900164.1 1167433..1168170(-) (comL) [Escherichia coli strain 65COLEC]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGA
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376