Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   H7F27_RS09900 Genome accession   NZ_CP060193
Coordinates   1924318..1924938 (-) Length   206 a.a.
NCBI ID   WP_095713165.1    Uniprot ID   -
Organism   Bacillus sp. PAMC26543     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1919318..1929938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F27_RS09880 (H7F27_09880) dnaD 1919612..1920310 (+) 699 WP_185848882.1 DNA replication protein DnaD -
  H7F27_RS09885 (H7F27_09885) nth 1920329..1920988 (+) 660 WP_010334708.1 endonuclease III -
  H7F27_RS09890 (H7F27_09890) - 1920985..1921479 (+) 495 WP_103671772.1 YpoC family protein -
  H7F27_RS09895 (H7F27_09895) - 1921552..1924296 (-) 2745 WP_185848883.1 PBP1A family penicillin-binding protein -
  H7F27_RS09900 (H7F27_09900) recU 1924318..1924938 (-) 621 WP_095713165.1 Holliday junction resolvase RecU Machinery gene
  H7F27_RS09905 (H7F27_09905) - 1924979..1925941 (+) 963 WP_095713164.1 DUF2515 domain-containing protein -
  H7F27_RS09910 (H7F27_09910) sspM 1925967..1926071 (-) 105 WP_010334703.1 acid-soluble spore protein SspM -
  H7F27_RS09915 (H7F27_09915) - 1926269..1926514 (+) 246 WP_095713163.1 DUF5446 family protein -
  H7F27_RS09920 (H7F27_09920) - 1926560..1926931 (+) 372 WP_185848884.1 YppE family protein -
  H7F27_RS09925 (H7F27_09925) - 1926966..1927154 (-) 189 WP_185848885.1 YppF family protein -
  H7F27_RS09930 (H7F27_09930) - 1927342..1927716 (+) 375 WP_024121828.1 YppG family protein -
  H7F27_RS09935 (H7F27_09935) - 1927738..1928157 (-) 420 WP_185848886.1 Hsp20/alpha crystallin family protein -
  H7F27_RS09940 (H7F27_09940) - 1928294..1928800 (+) 507 WP_044155315.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23962.14 Da        Isoelectric Point: 9.7294

>NTDB_id=474510 H7F27_RS09900 WP_095713165.1 1924318..1924938(-) (recU) [Bacillus sp. PAMC26543]
MIRYPNGKTFQPKHPVSSQNSHKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFGQVYFLEADRLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=474510 H7F27_RS09900 WP_095713165.1 1924318..1924938(-) (recU) [Bacillus sp. PAMC26543]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAACAGTCATAAAAGAGCGCCATC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAACAATCATCGACAACAGATTATAACGGAATTTATAAAGGGCGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CAAAACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATTGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGCCAGGTTTATTTTTTAGAAGCCGATAGGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCCATTCGAAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCAAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

96.602

100

0.966