NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	H7F26_RS03870	Genome accession	NZ_CP060192
Coordinates	729891..730463 (-)	Length	190 a.a.
NCBI ID	WP_003185937.1	Uniprot ID	A0A415J8E4
Organism	Bacillus sp. PAMC28748
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 724891..735463

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7F26_RS03845 (H7F26_03845)	-	725216..725623 (-)	408	WP_003185927.1	CBS domain-containing protein	-
H7F26_RS03850 (H7F26_03850)	-	725686..726642 (-)	957	WP_003185929.1	magnesium transporter CorA family protein	-
H7F26_RS03855 (H7F26_03855)	-	726803..728101 (+)	1299	WP_003185931.1	hemolysin family protein	-
H7F26_RS03860 (H7F26_03860)	-	728262..729473 (+)	1212	WP_003185933.1	ammonium transporter	-
H7F26_RS03865 (H7F26_03865)	-	729492..729842 (+)	351	WP_003185936.1	P-II family nitrogen regulator	-
H7F26_RS03870 (H7F26_03870)	clpP	729891..730463 (-)	573	WP_003185937.1	ATP-dependent Clp protease proteolytic subunit	Regulator
H7F26_RS03875 (H7F26_03875)	-	730477..731082 (-)	606	WP_017474248.1	RNA polymerase sigma factor	-
H7F26_RS03880 (H7F26_03880)	-	731219..732094 (-)	876	WP_003185941.1	M23 family metallopeptidase	-
H7F26_RS03885 (H7F26_03885)	-	732287..732784 (+)	498	WP_003185943.1	GNAT family N-acetyltransferase	-
H7F26_RS03890 (H7F26_03890)	-	732832..733275 (-)	444	WP_009329719.1	YwnF family protein	-
H7F26_RS03895 (H7F26_03895)	cls	733525..734973 (+)	1449	WP_025806104.1	cardiolipin synthase	-

Sequence

Protein

Download Length: 190 a.a. Molecular weight: 21049.23 Da Isoelectric Point: 5.3785

                                >NTDB_id=474407 H7F26_RS03870 WP_003185937.1 729891..730463(-) (clpP) [Bacillus sp. PAMC28748]

MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFNDDLANRVTAQLLFLSAEDNEKDISIYINSPGGSTSAGYAILDT

MDYVKPDVRTICVGMAASMGAILLAGGAKGKRYALKNSEIMIHQPLGGVKGQATDMEISAKRIIKLREKIERFFHERTGQ

PIEKLKADMERDYFMDADEAKAYGVIDAVL

Nucleotide

Download Length: 573 bp

                                >NTDB_id=474407 H7F26_RS03870 WP_003185937.1 729891..730463(-) (clpP) [Bacillus sp. PAMC28748]

ATGAACACCATTCCTTACGTCATTGAGAAAACGGCTGCCGGTGAAAGATCGTACGATATTTTTTCCAGACTTTTAAAAGA

CCGGATCATTATGATCGGTTCTGAATTCAACGATGACCTCGCCAATCGGGTCACCGCCCAATTGCTGTTTTTGTCAGCTG

AAGACAATGAAAAAGACATTTCGATCTATATCAACAGCCCGGGCGGATCAACTTCCGCGGGATATGCAATTTTGGATACG

ATGGATTATGTGAAGCCTGATGTCCGCACGATATGCGTCGGAATGGCCGCTTCCATGGGAGCGATTCTCCTCGCCGGCGG

AGCAAAAGGCAAACGGTATGCACTCAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGCGTCAAAGGACAGGCGA

CAGACATGGAGATTTCAGCGAAGCGGATCATCAAACTGAGGGAAAAAATCGAGCGCTTCTTTCACGAACGAACGGGCCAG

CCCATTGAAAAACTAAAAGCCGACATGGAACGCGATTACTTTATGGATGCGGACGAAGCGAAGGCATACGGTGTTATTGA

TGCTGTTTTGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-190)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A415J8E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	65.263	100	0.653
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	62.567	98.421	0.616
clpP	Streptococcus thermophilus LMD-9	55.556	99.474	0.553
clpP	Streptococcus pneumoniae Rx1	55.556	99.474	0.553
clpP	Streptococcus pneumoniae D39	55.556	99.474	0.553
clpP	Streptococcus thermophilus LMG 18311	55.556	99.474	0.553
clpP	Streptococcus pneumoniae R6	55.556	99.474	0.553
clpP	Streptococcus pneumoniae TIGR4	55.556	99.474	0.553
clpP	Streptococcus mutans UA159	55.026	99.474	0.547
clpP	Streptococcus pyogenes JRS4	54.497	99.474	0.542
clpP	Streptococcus pyogenes MGAS315	54.497	99.474	0.542
clpP	Lactococcus lactis subsp. cremoris KW2	51.852	99.474	0.516
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.323	99.474	0.511

Detailed information NTG0474407