Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   JRY11_RS05180 Genome accession   NZ_CP070382
Coordinates   967168..967833 (-) Length   221 a.a.
NCBI ID   WP_248554406.1    Uniprot ID   -
Organism   Lactococcus lactis strain KF140     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 962168..972833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY11_RS05160 (JRY11_001039) - 962659..963789 (+) 1131 WP_014570781.1 aminotransferase -
  JRY11_RS05165 (JRY11_001040) - 963981..965474 (+) 1494 WP_015427125.1 basic amino acid/polyamine antiporter -
  JRY11_RS05170 (JRY11_001041) - 965553..966044 (+) 492 WP_023188625.1 prolyl-tRNA synthetase associated domain-containing protein -
  JRY11_RS05175 (JRY11_001042) dinB 966123..967217 (+) 1095 WP_023188626.1 DNA polymerase IV -
  JRY11_RS05180 (JRY11_001043) cclA/cilC 967168..967833 (-) 666 WP_248554406.1 A24 family peptidase Machinery gene
  JRY11_RS05185 (JRY11_001044) - 968000..968446 (+) 447 WP_004254538.1 Dps family protein -
  JRY11_RS05190 (JRY11_001045) - 968529..968915 (-) 387 WP_004254540.1 rhodanese-like domain-containing protein -
  JRY11_RS05195 (JRY11_001046) - 968918..969889 (-) 972 WP_017865099.1 ROK family glucokinase -
  JRY11_RS05200 (JRY11_001047) - 969922..970143 (-) 222 WP_010906270.1 YqgQ family protein -
  JRY11_RS05205 (JRY11_001048) - 970335..971063 (+) 729 WP_023188628.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  JRY11_RS05210 (JRY11_001049) - 971363..971689 (+) 327 WP_025016835.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25655.77 Da        Isoelectric Point: 8.3252

>NTDB_id=474142 JRY11_RS05180 WP_248554406.1 967168..967833(-) (cclA/cilC) [Lactococcus lactis strain KF140]
MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQQLLAYRDLIPIFSQISSGSHCRYCKSEITYLYVFLEFSS
ALIFVLAWVNYLKPSQFLLIILSLILSAFDYRQHSFPFVIWFIFALSFILIFPLSPLFYFWLILAVLAEKFNLRVGSGDF
LWFFTASFSLTFLNEMLILQIACSLGIIYYLITKKRVEIAFIPFLTIAYLMLLFGHQILSP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=474142 JRY11_RS05180 WP_248554406.1 967168..967833(-) (cclA/cilC) [Lactococcus lactis strain KF140]
ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGCTCCTTTTTTGGCTTAATAGTTGACCGTATTCCACTAAG
AAAATCAATTATTTTTGGACGCTCACATTGTGATTCTTGTCAGCAACTTTTAGCCTATCGTGATCTAATTCCTATTTTTT
CTCAAATAAGCTCTGGCTCACATTGCCGTTATTGTAAAAGTGAAATTACATATTTATATGTTTTTTTGGAGTTCTCATCA
GCTTTAATTTTTGTTTTAGCTTGGGTAAATTATCTTAAACCTAGTCAATTTTTACTGATTATTCTTTCACTAATTTTATC
TGCTTTTGATTATCGTCAGCACAGTTTTCCTTTTGTTATCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTC
TTTCTCCCCTTTTCTATTTTTGGCTTATTTTAGCCGTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTT
TTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACGAAATGCTGATCCTTCAAATCGCTTGTTCACTTGGTAT
CATTTATTATCTAATCACAAAAAAACGAGTTGAAATTGCCTTCATCCCGTTTCTAACTATTGCATATCTAATGTTGCTTT
TTGGGCACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

40.271

100

0.403
  cclA/cilC Streptococcus pneumoniae Rx1

40.553

98.19

0.398
  cclA/cilC Streptococcus pneumoniae D39

40.553

98.19

0.398
  cclA/cilC Streptococcus pneumoniae R6

40.553

98.19

0.398
  cclA/cilC Streptococcus pneumoniae TIGR4

40.092

98.19

0.394
  cclA/cilC Streptococcus mitis NCTC 12261

38.532

98.643

0.38