Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | H5405_RS07545 | Genome accession | NZ_CP060085 |
| Coordinates | 1469906..1470943 (+) | Length | 345 a.a. |
| NCBI ID | WP_029326074.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain HAB-2 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1464906..1475943
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5405_RS07525 (H5405_07525) | - | 1465387..1466217 (+) | 831 | WP_029326073.1 | STAS domain-containing protein | - |
| H5405_RS07530 (H5405_07530) | - | 1466255..1467556 (-) | 1302 | WP_007612576.1 | hemolysin family protein | - |
| H5405_RS07535 (H5405_07535) | - | 1467702..1468652 (+) | 951 | WP_007408319.1 | magnesium transporter CorA family protein | - |
| H5405_RS07540 (H5405_07540) | comGA | 1468849..1469919 (+) | 1071 | WP_007612574.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| H5405_RS07545 (H5405_07545) | comGB | 1469906..1470943 (+) | 1038 | WP_029326074.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| H5405_RS07550 (H5405_07550) | comGC | 1470990..1471256 (+) | 267 | WP_042635730.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| H5405_RS07555 (H5405_07555) | comGD | 1471246..1471683 (+) | 438 | WP_007612572.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| H5405_RS07560 (H5405_07560) | comGE | 1471667..1471981 (+) | 315 | WP_029326075.1 | competence type IV pilus minor pilin ComGE | - |
| H5405_RS07565 (H5405_07565) | comGF | 1471926..1472390 (+) | 465 | WP_228767516.1 | competence type IV pilus minor pilin ComGF | - |
| H5405_RS07570 (H5405_07570) | comGG | 1472391..1472768 (+) | 378 | WP_007612567.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| H5405_RS07575 (H5405_07575) | - | 1472825..1473004 (+) | 180 | WP_003153093.1 | YqzE family protein | - |
| H5405_RS07580 (H5405_07580) | - | 1473045..1473374 (-) | 330 | WP_007612559.1 | DUF3889 domain-containing protein | - |
| H5405_RS07585 (H5405_07585) | tapA | 1473633..1474304 (+) | 672 | WP_029326077.1 | amyloid fiber anchoring/assembly protein TapA | - |
| H5405_RS07590 (H5405_07590) | sipW | 1474276..1474860 (+) | 585 | WP_007612550.1 | signal peptidase I SipW | - |
| H5405_RS07595 (H5405_07595) | tasA | 1474925..1475710 (+) | 786 | WP_007612547.1 | biofilm matrix protein TasA | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39568.85 Da Isoelectric Point: 9.6787
>NTDB_id=473793 H5405_RS07545 WP_029326074.1 1469906..1470943(+) (comGB) [Bacillus velezensis strain HAB-2]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGDLLQRKLIQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGDLLQRKLIQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=473793 H5405_RS07545 WP_029326074.1 1469906..1470943(+) (comGB) [Bacillus velezensis strain HAB-2]
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCAGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTTATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCAGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGACTTGTTACAGAGAAAGCTCATACAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTCATCTTTGCGTTTTTT
CGGCATTTTCATGAAGCCTGCGCACTTGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTCATTGTTGTAAAAATACCCCTCTTAGGGAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCTGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCGGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAT
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCAGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTTATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCAGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGACTTGTTACAGAGAAAGCTCATACAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTCATCTTTGCGTTTTTT
CGGCATTTTCATGAAGCCTGCGCACTTGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTCATTGTTGTAAAAATACCCCTCTTAGGGAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCTGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCGGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAT
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
65.944 |
93.623 |
0.617 |