Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   H3L91_RS00090 Genome accession   NZ_CP059571
Coordinates   17321..17863 (-) Length   180 a.a.
NCBI ID   WP_040658477.1    Uniprot ID   -
Organism   Neisseria bacilliformis strain DSM 23338     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 12321..22863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L91_RS00070 (H3L91_00070) apbC 13530..14609 (+) 1080 WP_007341313.1 iron-sulfur cluster carrier protein ApbC -
  H3L91_RS00075 (H3L91_00075) tfpZ 14705..15502 (-) 798 WP_007341314.1 TfpX/TfpZ family type IV pilin accessory protein -
  H3L91_RS00080 (H3L91_00080) - 15542..16102 (-) 561 WP_154647161.1 pilin -
  H3L91_RS00085 (H3L91_00085) pilE 16180..16722 (-) 543 WP_040659815.1 pilin Machinery gene
  H3L91_RS00090 (H3L91_00090) pilE 17321..17863 (-) 543 WP_040658477.1 pilin Machinery gene
  H3L91_RS00095 (H3L91_00095) asd 18346..19248 (-) 903 WP_007341318.1 archaetidylserine decarboxylase -
  H3L91_RS00100 (H3L91_00100) ubiM 19492..20676 (+) 1185 WP_007341320.1 5-demethoxyubiquinol-8 5-hydroxylase UbiM -
  H3L91_RS00105 (H3L91_00105) - 20764..21315 (+) 552 WP_007341321.1 hypothetical protein -
  H3L91_RS00110 (H3L91_00110) - 21370..21567 (+) 198 WP_007341322.1 hypothetical protein -
  H3L91_RS00115 (H3L91_00115) - 21754..22686 (+) 933 WP_007341324.1 alpha/beta hydrolase-fold protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18903.63 Da        Isoelectric Point: 9.0223

>NTDB_id=470848 H3L91_RS00090 WP_040658477.1 17321..17863(-) (pilE) [Neisseria bacilliformis strain DSM 23338]
MKAMQKGFTLIELMIVVAIVGILAAIALPAYQDYTVRSRVTEGLNLAESAKTLISTDATSINDLDIAVAAWNRQANNTGA
NSKYVTSVKMAAAGDNRGELTITFDAAKVGVPTTENTLILTPWVNNGSAKTRLAKALTDGIAGNLDWSCQSTTSAAAVKQ
IGQAGTLGKLPEKYAPSQCR

Nucleotide


Download         Length: 543 bp        

>NTDB_id=470848 H3L91_RS00090 WP_040658477.1 17321..17863(-) (pilE) [Neisseria bacilliformis strain DSM 23338]
ATGAAAGCAATGCAAAAAGGTTTCACCCTGATCGAACTGATGATCGTCGTCGCCATTGTCGGCATCTTGGCCGCCATCGC
CCTGCCCGCCTACCAAGACTACACCGTCCGCAGCCGCGTTACCGAGGGTCTGAACTTGGCCGAGTCTGCCAAAACCCTGA
TTTCCACCGACGCCACTTCCATTAATGACTTGGACATCGCCGTCGCCGCATGGAACCGTCAAGCCAACAATACCGGTGCC
AATTCCAAATACGTTACCAGCGTAAAAATGGCCGCTGCCGGCGACAACCGGGGCGAGCTGACCATCACATTCGATGCCGC
CAAAGTCGGCGTGCCGACCACCGAAAACACCCTCATCCTCACCCCGTGGGTCAACAACGGCAGCGCCAAAACCCGTTTGG
CCAAAGCCCTTACTGACGGAATTGCCGGCAACCTCGACTGGTCCTGCCAATCAACCACCAGCGCAGCCGCAGTCAAACAA
ATCGGCCAAGCCGGCACACTCGGCAAACTGCCGGAAAAATACGCTCCTTCGCAATGCCGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-180)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

44.5

100

0.494
  pilA Ralstonia pseudosolanacearum GMI1000

43.333

100

0.433
  pilA2 Legionella pneumophila strain ERS1305867

43.503

98.333

0.428
  pilA2 Legionella pneumophila str. Paris

42.938

98.333

0.422
  pilE Neisseria gonorrhoeae MS11

34.392

100

0.361
  comP Acinetobacter baylyi ADP1

35.519

100

0.361