Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   H3L91_RS00085 Genome accession   NZ_CP059571
Coordinates   16180..16722 (-) Length   180 a.a.
NCBI ID   WP_040659815.1    Uniprot ID   -
Organism   Neisseria bacilliformis strain DSM 23338     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 11180..21722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L91_RS00065 (H3L91_00065) - 12004..12891 (+) 888 WP_040658476.1 tyrosine-type recombinase/integrase -
  H3L91_RS00070 (H3L91_00070) apbC 13530..14609 (+) 1080 WP_007341313.1 iron-sulfur cluster carrier protein ApbC -
  H3L91_RS00075 (H3L91_00075) tfpZ 14705..15502 (-) 798 WP_007341314.1 TfpX/TfpZ family type IV pilin accessory protein -
  H3L91_RS00080 (H3L91_00080) - 15542..16102 (-) 561 WP_154647161.1 pilin -
  H3L91_RS00085 (H3L91_00085) pilE 16180..16722 (-) 543 WP_040659815.1 pilin Machinery gene
  H3L91_RS00090 (H3L91_00090) pilE 17321..17863 (-) 543 WP_040658477.1 pilin Machinery gene
  H3L91_RS00095 (H3L91_00095) asd 18346..19248 (-) 903 WP_007341318.1 archaetidylserine decarboxylase -
  H3L91_RS00100 (H3L91_00100) ubiM 19492..20676 (+) 1185 WP_007341320.1 5-demethoxyubiquinol-8 5-hydroxylase UbiM -
  H3L91_RS00105 (H3L91_00105) - 20764..21315 (+) 552 WP_007341321.1 hypothetical protein -
  H3L91_RS00110 (H3L91_00110) - 21370..21567 (+) 198 WP_007341322.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18789.41 Da        Isoelectric Point: 6.3188

>NTDB_id=470847 H3L91_RS00085 WP_040659815.1 16180..16722(-) (pilE) [Neisseria bacilliformis strain DSM 23338]
MKAMQKGFTLIELMIVVAIIGILAAIALPAYQDYTVRSRITEGLNLAESAKTMLGTDATSVNDLDIAVAAWNRQANGTGA
TSKYVKSVLMNTTGDTRGELTVTFDGAAVGVKTGEDTLVLTPWINDGTNKTRLAKALTDGVAGNLDWSCQSATNATATKQ
IGAAGTAGTVLEKYAPSQCR

Nucleotide


Download         Length: 543 bp        

>NTDB_id=470847 H3L91_RS00085 WP_040659815.1 16180..16722(-) (pilE) [Neisseria bacilliformis strain DSM 23338]
ATGAAAGCAATGCAAAAAGGTTTCACCCTGATCGAGTTGATGATCGTTGTCGCCATTATCGGTATTTTGGCTGCCATCGC
CCTGCCGGCTTACCAGGACTACACTGTCCGCAGCCGTATCACTGAGGGTCTGAACCTGGCCGAATCCGCCAAAACCATGC
TCGGTACCGACGCTACTTCCGTAAACGACTTGGACATCGCTGTTGCCGCTTGGAACCGTCAGGCTAACGGTACTGGTGCT
ACTTCCAAATACGTGAAAAGCGTGCTGATGAACACTACCGGCGACACTCGCGGCGAACTGACTGTTACATTCGACGGTGC
TGCCGTTGGTGTGAAAACCGGTGAAGACACTCTGGTTCTGACTCCTTGGATCAACGACGGTACCAACAAAACCCGTCTGG
CCAAAGCCCTGACTGACGGCGTTGCCGGTAACCTCGACTGGTCTTGCCAATCCGCTACCAACGCTACTGCTACCAAACAA
ATCGGCGCAGCTGGTACTGCCGGTACTGTTCTGGAAAAATACGCTCCTTCTCAATGCCGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)

Pilin (bacterial filament) (Pilin)

(36-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

45.771

100

0.511
  pilA Ralstonia pseudosolanacearum GMI1000

41.667

100

0.417
  pilA2 Legionella pneumophila str. Paris

40.341

97.778

0.394
  pilA2 Legionella pneumophila strain ERS1305867

39.773

97.778

0.389