Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H3L93_RS11965 Genome accession   NZ_CP059569
Coordinates   2221245..2222414 (+) Length   389 a.a.
NCBI ID   WP_003795804.1    Uniprot ID   C4GKE4
Organism   Kingella oralis strain DSM 18271     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2216245..2227414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L93_RS11940 (H3L93_11915) - 2216439..2217071 (-) 633 WP_003795819.1 hypothetical protein -
  H3L93_RS11945 (H3L93_11920) - 2217436..2217981 (-) 546 WP_003795812.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  H3L93_RS11950 (H3L93_11925) glmU 2218420..2219787 (-) 1368 WP_003795809.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  H3L93_RS11955 (H3L93_11930) - 2219887..2220105 (-) 219 WP_003795808.1 hypothetical protein -
  H3L93_RS11960 (H3L93_11935) - 2220492..2221064 (-) 573 WP_003795806.1 hypothetical protein -
  H3L93_RS11965 (H3L93_11940) dprA 2221245..2222414 (+) 1170 WP_003795804.1 DNA-processing protein DprA Machinery gene
  H3L93_RS11970 (H3L93_11945) tsf 2222604..2223458 (-) 855 WP_003795802.1 translation elongation factor Ts -
  H3L93_RS11975 (H3L93_11950) rpsB 2223533..2224261 (-) 729 WP_040558501.1 30S ribosomal protein S2 -
  H3L93_RS11980 (H3L93_11955) - 2224461..2224859 (-) 399 WP_003798210.1 ComEA family DNA-binding protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 41778.70 Da        Isoelectric Point: 6.4399

>NTDB_id=470809 H3L93_RS11965 WP_003795804.1 2221245..2222414(+) (dprA) [Kingella oralis strain DSM 18271]
MTESERQAWLQLAFTPHIGAESFALLLQMYGTASAALQAPAEVIAQLGKQAKHTAREWHNTSLARAAAEAALQWEQQPGC
RLMLSCDSDYPAMLAEGITAPPVLFLRGNPEWLHKPSIAIVGSRHATPQAMRIAHDFGQALSEYGITVISGMAAGIDTAA
HQGALKGKAGTIAVWGTGIDRIYPASNRALAHQIAEQGLIVSEFPLDTRPLAGNFPRRNRIIAAQSQAVLVVEAALESGS
LITARLASEMGRDVMAIPGSIDNPHAKGCHKLIKEGAKLVENLMDIVDELSYPARIAPSSLKPKTHAAKPKPTLSQPLST
ELPTTTPSPEPESTNEHPLLTKMGYDPIHPDTLAEQTEQPAADIYAQLTEWELDGIVASMAGGRYQRIK

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=470809 H3L93_RS11965 WP_003795804.1 2221245..2222414(+) (dprA) [Kingella oralis strain DSM 18271]
ATGACCGAATCCGAACGCCAAGCATGGCTACAACTCGCTTTCACGCCCCACATCGGCGCGGAAAGTTTCGCGCTTCTCTT
ACAAATGTACGGCACCGCCAGCGCAGCCTTGCAAGCGCCCGCCGAAGTCATCGCGCAACTGGGCAAGCAAGCCAAACACA
CCGCCCGCGAATGGCACAACACAAGCCTCGCCCGCGCCGCCGCCGAAGCCGCGCTGCAATGGGAGCAACAACCCGGCTGC
CGCCTGATGCTCTCGTGCGACAGCGATTACCCCGCCATGCTCGCCGAAGGCATCACCGCGCCGCCCGTATTGTTTCTGCG
CGGCAACCCCGAATGGCTGCACAAACCCAGCATTGCCATCGTGGGCAGCCGCCACGCCACCCCGCAAGCCATGCGCATCG
CCCACGATTTCGGGCAAGCCCTCAGCGAATACGGCATCACCGTTATATCAGGCATGGCAGCAGGCATCGACACCGCCGCC
CACCAAGGCGCGCTCAAAGGCAAAGCCGGCACCATCGCCGTTTGGGGCACAGGCATCGACCGCATCTATCCCGCCAGCAA
CCGCGCCCTTGCACATCAAATCGCCGAGCAAGGTCTCATCGTCTCCGAATTTCCGCTGGACACCCGCCCGCTGGCAGGCA
ACTTCCCCCGCCGCAACCGAATCATCGCCGCGCAAAGCCAAGCCGTGCTGGTGGTAGAAGCCGCGCTAGAAAGCGGCTCA
CTCATCACCGCCCGCCTCGCCAGCGAAATGGGGCGCGACGTGATGGCAATACCAGGCTCAATTGACAATCCACACGCCAA
AGGCTGCCACAAACTCATCAAAGAAGGCGCAAAACTCGTTGAAAACCTTATGGACATTGTGGACGAACTCTCCTACCCCG
CCCGCATCGCCCCCAGCAGCCTGAAACCCAAAACCCACGCCGCTAAACCCAAGCCCACCTTATCCCAGCCCTTATCCACA
GAGTTACCCACAACGACACCCTCGCCCGAACCCGAATCCACCAACGAACACCCTTTGCTTACCAAAATGGGCTACGACCC
CATCCACCCCGACACCCTAGCCGAACAAACAGAACAACCCGCCGCCGACATCTACGCCCAGCTCACCGAATGGGAGCTGG
ACGGCATCGTAGCCAGCATGGCAGGCGGGCGCTACCAGCGCATCAAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(324-383)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C4GKE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

63.636

100

0.648
  dprA Neisseria meningitidis MC58

63.636

100

0.648
  dprA Neisseria gonorrhoeae MS11

62.06

100

0.635
  dprA Neisseria gonorrhoeae strain FA1090

61.558

100

0.63
  dprA Glaesserella parasuis strain SC1401

40.157

97.943

0.393
  dprA Vibrio cholerae strain A1552

37.469

100

0.388
  dprA Vibrio campbellii strain DS40M4

38.32

97.943

0.375
  dprA Acinetobacter baylyi ADP1

38.544

95.373

0.368