Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   H2788_RS01670 Genome accession   NZ_CP059550
Coordinates   351834..353945 (+) Length   703 a.a.
NCBI ID   WP_174735561.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain E-022166     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346834..358945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2788_RS01650 (H2788_01650) pilM 348795..349853 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  H2788_RS01655 (H2788_01655) pilN 349853..350497 (+) 645 WP_151682783.1 PilN domain-containing protein Machinery gene
  H2788_RS01660 (H2788_01660) pilO 350494..351234 (+) 741 WP_151682782.1 type 4a pilus biogenesis protein PilO Machinery gene
  H2788_RS01665 (H2788_01665) pilP 351245..351772 (+) 528 WP_151682781.1 pilus assembly protein PilP Machinery gene
  H2788_RS01670 (H2788_01670) pilQ 351834..353945 (+) 2112 WP_174735561.1 type IV pilus secretin PilQ family protein Machinery gene
  H2788_RS01675 (H2788_01675) aroK 353957..354526 (+) 570 WP_004705195.1 shikimate kinase AroK -
  H2788_RS01680 (H2788_01680) aroB 354555..355637 (+) 1083 WP_068932371.1 3-dehydroquinate synthase -
  H2788_RS01685 (H2788_01685) - 355653..356526 (+) 874 Protein_323 hypothetical protein -

Sequence

Protein


Download         Length: 703 a.a.        Molecular weight: 76305.85 Da        Isoelectric Point: 6.7714

>NTDB_id=470526 H2788_RS01670 WP_174735561.1 351834..353945(+) (pilQ) [Acinetobacter seifertii strain E-022166]
MNQVFRQFSMGVVAIAIMQAASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQPKI
AVATNEASSVDVTSDEQRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTTKKPIPVAATQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTAVDVQQQGSKVVIRTLGTKIPTHLTRRLNVNDFATPVSIIDAYNDKDAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKSVSSSYKTPSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDQAKALAQTIKLAPIQTDYIRLSYAKAVDVLKLIEDTRDTKGSATNHTATSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITKNNDLLVG
GSEKTLWDLRTPDSSGKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTADKQTA
KVATGQQVPYLMTTTSGAGTTATTSFKDALLSLDVTPNITPDGKIQMKLDISKDSIAGEAPNGELILNKNNINTNVLVDN
GETVILGGVFEQTTKNSQTKVPFFGDIPLVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2112 bp        

>NTDB_id=470526 H2788_RS01670 WP_174735561.1 351834..353945(+) (pilQ) [Acinetobacter seifertii strain E-022166]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGTTGTAGCGATTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAACGCAAATTGCAGGTCAGGGTACAGAAATTAGAGTCATGTTTAATGGTTTGCCTCCACAGCCAC
AAGCTTACCAACTTGAAAACCCTTCGCGTTTAATACTAGATTTTGATAAGGCACAACAAAGTTTAAAGCAGCCTAAAATA
GCTGTTGCAACTAATGAAGCAAGTTCAGTTGATGTGACTTCAGATGAACAGCGTTCTCGTTTAACCGTAAATCTAAAAGA
TGCAGGTGCTTTTACAACACGTGTGGAAGGTAATACTTTCATTCTAAAAATTAACTCAGCTCAAACAACTAAGAAGCCGA
TACCAGTAGCTGCTACACAACCACAAGGTGTTTCAAATATTGGTTTTCAACGTGGTAGTCAGGGAGAGGGTTTAGTTGTT
GTAGATCTTCTGGGAAGTAATACAGCTGTAGATGTTCAACAACAAGGTAGTAAAGTTGTTATAAGAACATTAGGCACAAA
AATTCCGACACATTTAACGCGCCGCTTAAATGTAAATGATTTTGCAACTCCAGTTTCAATTATCGATGCTTATAATGATA
AAGATGCTGGTGTAATTACGATTCAGTCATCTGGTAGCTATGAATATATGGCGTATCAGGCTGAAAATAAGCTGACCATT
AGTCTGAAACGTCCTCAAGATAAAAGTGTATCGTCTTCATATAAGACACCAAGTTATTCTGGCAATAAGCTTTCTTTAGA
CTTTCAAGATATTGAAGTGCGTCGTGTTCTACAGTTGCTTGCTGATTTTACAGGAATCAACATGGTGGCAGCAGATAGCG
TGCAAGGTAATATCACACTACGTTTAAAAGATGTACCTTGGGATCAAGCCCTTGATATTATTTTAAAGACAAAAAATCTT
GATAAACGCCGTAATGGGAATGTGATCTGGATTGCGCCAGTTGCTGAGTTAATTAAAGCTGAAGATGATCAGGCAAAAGC
TTTAGCGCAAACTATTAAGTTGGCTCCAATCCAAACTGATTATATCCGCTTGAGTTATGCGAAAGCAGTTGATGTGCTTA
AGTTGATTGAAGATACTCGTGATACAAAAGGATCTGCTACGAATCATACCGCCACTTCAGATTCTCTGGCTTTAGAGAGT
TTATTGAGCTCACGTGGTAGCGCGGTTGCGGATACCCGAACTAATACCTTGATTGTAAATGATACAGCACAGAATATTGA
TAAAGTTCGTAAAATGATTGACTTGCTTGATGTACAAGTGAAACAAGTCATGGTTGAAGCGCGTATTGTAAGAGCCTCTA
CCTCATTTACAAAAGAACTTGGGGTGAAATGGGGTATTCTTTCACAAGGAATTACTAAGAATAATGATTTATTGGTTGGG
GGGAGTGAAAAGACTTTATGGGATCTAAGAACTCCTGATAGTAGTGGAAAATACACAATTGAGCGACCAGATAACCTAAA
CGTCGATTTAGGAGTTTCTAATCCAGCGGGAAGTATTGCTTTTGGTCTTATCAGTATGTCTGACTTTATGTTAGATTTAG
AGTTATCTGCTTTACAGGCTGATGGCTATGGTGAAGTGATTTCAACGCCTAAAGTGATGACGGCCGATAAGCAAACTGCA
AAAGTTGCAACAGGTCAACAAGTTCCTTATCTAATGACGACGACCTCTGGTGCTGGTACTACTGCAACAACATCATTTAA
AGATGCTCTCTTAAGTCTAGATGTTACTCCGAACATTACACCTGATGGCAAGATACAAATGAAGTTAGATATTTCTAAGG
ACTCTATAGCGGGTGAAGCACCAAATGGTGAGTTAATTCTAAATAAAAATAATATCAATACCAATGTTTTAGTTGATAAT
GGAGAAACTGTTATTTTAGGTGGAGTATTCGAGCAAACAACAAAAAACTCTCAAACCAAAGTTCCTTTCTTTGGAGATAT
TCCTTTGGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTACTGATTTTCGTAACACCACGAA
TTGTTAATGACACTTTGGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(537-695)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

85.992

100

0.882
  pilQ Acinetobacter baumannii strain A118

85.853

100

0.881
  comQ Acinetobacter baylyi ADP1

73.766

100

0.744
  pilQ Pseudomonas aeruginosa PAK

38.338

100

0.407