Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   H2788_RS01665 Genome accession   NZ_CP059550
Coordinates   351245..351772 (+) Length   175 a.a.
NCBI ID   WP_151682781.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain E-022166     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346245..356772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2788_RS01650 (H2788_01650) pilM 348795..349853 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  H2788_RS01655 (H2788_01655) pilN 349853..350497 (+) 645 WP_151682783.1 PilN domain-containing protein Machinery gene
  H2788_RS01660 (H2788_01660) pilO 350494..351234 (+) 741 WP_151682782.1 type 4a pilus biogenesis protein PilO Machinery gene
  H2788_RS01665 (H2788_01665) pilP 351245..351772 (+) 528 WP_151682781.1 pilus assembly protein PilP Machinery gene
  H2788_RS01670 (H2788_01670) pilQ 351834..353945 (+) 2112 WP_174735561.1 type IV pilus secretin PilQ family protein Machinery gene
  H2788_RS01675 (H2788_01675) aroK 353957..354526 (+) 570 WP_004705195.1 shikimate kinase AroK -
  H2788_RS01680 (H2788_01680) aroB 354555..355637 (+) 1083 WP_068932371.1 3-dehydroquinate synthase -
  H2788_RS01685 (H2788_01685) - 355653..356526 (+) 874 Protein_323 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19373.56 Da        Isoelectric Point: 8.9883

>NTDB_id=470525 H2788_RS01665 WP_151682781.1 351245..351772(+) (pilP) [Acinetobacter seifertii strain E-022166]
MKIKQITLYVLACAALIGCDSRIDAVTQEMANIRNQPPLSIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITQISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=470525 H2788_RS01665 WP_151682781.1 351245..351772(+) (pilP) [Acinetobacter seifertii strain E-022166]
ATGAAAATTAAGCAAATTACTCTTTATGTTCTGGCGTGTGCTGCTCTTATAGGATGTGATTCAAGAATTGATGCGGTAAC
TCAGGAAATGGCAAATATCCGTAATCAGCCACCGCTCTCTATTGAACCCGCACCTATTTTTACTCCAGTACCACAATTTA
ATTATGCTGCCCATCAATTAAAAAGCCCATTTATGCCAAGCTCGCTGGCTGCTGAGCTAAAAATTATGGCTGGGAAGCGG
GTTTATCCGAATTTTTCACGTGCACCGCAACCATTAGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGAAGTATGCG
TAATAATCGTGGTCAAATATTGGCTCTCATCCAGACGCCAGATCAGCAAATCGAACGCGTACAAGTGGGCAACTATATGG
GCATGAATCAGGGTCGTATTACGCAAATTAGTCCGACTCAGATTGATTTGGTTGAGATTGTGCCAGATGGTCGAGAAGGC
TATGTTGAAAGACCGAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

97.143

100

0.971
  comL Acinetobacter baylyi ADP1

71.345

97.714

0.697