Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H2788_RS01655 Genome accession   NZ_CP059550
Coordinates   349853..350497 (+) Length   214 a.a.
NCBI ID   WP_151682783.1    Uniprot ID   A0A7H2PS74
Organism   Acinetobacter seifertii strain E-022166     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344853..355497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2788_RS01635 (H2788_01635) - 344901..345233 (+) 333 WP_077168921.1 hypothetical protein -
  H2788_RS01640 (H2788_01640) - 345236..346060 (+) 825 WP_347016888.1 putative RNA methyltransferase -
  H2788_RS01645 (H2788_01645) ponA 346077..348632 (-) 2556 WP_347016890.1 penicillin-binding protein PBP1a -
  H2788_RS01650 (H2788_01650) pilM 348795..349853 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  H2788_RS01655 (H2788_01655) pilN 349853..350497 (+) 645 WP_151682783.1 PilN domain-containing protein Machinery gene
  H2788_RS01660 (H2788_01660) pilO 350494..351234 (+) 741 WP_151682782.1 type 4a pilus biogenesis protein PilO Machinery gene
  H2788_RS01665 (H2788_01665) pilP 351245..351772 (+) 528 WP_151682781.1 pilus assembly protein PilP Machinery gene
  H2788_RS01670 (H2788_01670) pilQ 351834..353945 (+) 2112 WP_174735561.1 type IV pilus secretin PilQ family protein Machinery gene
  H2788_RS01675 (H2788_01675) aroK 353957..354526 (+) 570 WP_004705195.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24166.57 Da        Isoelectric Point: 5.3957

>NTDB_id=470523 H2788_RS01655 WP_151682783.1 349853..350497(+) (pilN) [Acinetobacter seifertii strain E-022166]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLITSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQDLQSQRPVVVRLVDELVRVMPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEDKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTADNNADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=470523 H2788_RS01655 WP_151682783.1 349853..350497(+) (pilN) [Acinetobacter seifertii strain E-022166]
ATGGCAACAATTAATTTACTACCTTGGCGTGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGCTTTGG
GGTGGTTGTGTTAGGAATTACAACCGTATTTGGGGGGTGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ATCAACTTATTACAAGTACTAATCAAAACCTTGATCAGCAATTAAAAGCATTAAATGGTTTACAAGAACAACGTGATGCC
ATCATTGAGCGTATGAAATTGATTCAAGATTTACAGAGTCAGCGTCCAGTCGTGGTAAGACTGGTTGATGAGTTAGTCAG
AGTCATGCCGCCTGCAATGTATTTAACGAAATTTAGCCGAACTGGGGATAAATTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACGGTAGCTGAACTACTGCGTAATCTTGAAGCATCTCCTTGGTATCGAAATGCTTTTATGAACTCTTTCTTGGCT
ACTGAAGATAAAAAAGATAAGGCAGCAAGTTCTCTTCTTCCTAGGGTAGAAGATCATTACGGTAGTTTTGTTGTGACTGT
CGATTTAGGGGAAATGGGCGTGACCACAGCTGATAATAATGCTGATAAACCAGCCGTAGCTAAAGATACGGGGGCAGCAA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2PS74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

92.056

100

0.921
  comN Acinetobacter baylyi ADP1

70.142

98.598

0.692