Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   H2R00_RS18325 Genome accession   NZ_CP059494
Coordinates   3713338..3713934 (-) Length   198 a.a.
NCBI ID   WP_003185550.1    Uniprot ID   A0A1J6GJE1
Organism   Bacillus haynesii strain P19     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3708338..3718934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS18300 - 3709001..3709591 (+) 591 WP_154999464.1 carbonic anhydrase -
  H2R00_RS18305 - 3709614..3711233 (+) 1620 WP_154999465.1 solute carrier family 23 protein -
  H2R00_RS18310 - 3711282..3712259 (-) 978 WP_182070011.1 HD domain-containing protein -
  H2R00_RS18315 - 3712249..3712581 (-) 333 WP_182070012.1 MazG-like family protein -
  H2R00_RS18320 - 3712692..3713267 (+) 576 WP_154999468.1 TIGR00730 family Rossman fold protein -
  H2R00_RS18325 clpP 3713338..3713934 (-) 597 WP_003185550.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  H2R00_RS21325 - 3714268..3714420 (+) 153 WP_234113266.1 hypothetical protein -
  H2R00_RS18340 - 3714738..3714890 (+) 153 WP_182070013.1 hypothetical protein -
  H2R00_RS18345 - 3714963..3716510 (-) 1548 WP_182070014.1 glycoside hydrolase family 32 protein -
  H2R00_RS18350 - 3716587..3718035 (-) 1449 WP_182070015.1 glycoside hydrolase family 68 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21803.99 Da        Isoelectric Point: 4.7982

>NTDB_id=470090 H2R00_RS18325 WP_003185550.1 3713338..3713934(-) (clpP) [Bacillus haynesii strain P19]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILAERTGQ
PLEVIERDTDRDNFKTAEEAKEYGLIDKVLTRNIDAQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=470090 H2R00_RS18325 WP_003185550.1 3713338..3713934(-) (clpP) [Bacillus haynesii strain P19]
ATGAATTTAATACCTACAGTCATTGAACAGACGAACCGCGGGGAAAGAGCGTATGACATTTACTCACGCTTGTTGAAAGA
CCGTATCATTATGCTGGGATCAGCAATCGATGACAATGTTGCGAACTCCATCGTATCTCAGCTTCTATTCCTTGAAGCCG
AAGATCCAGAAAAAGATATCAGCATCTATATCAACAGCCCTGGCGGCTCCATCACAGCCGGTATGGCGATTTATGACACC
ATGCAGTTTATTAAACCGCAAGTCTCTACGATTTGTACGGGAATGGCGGCATCTATGGGTGCGTTCCTTCTTGCAGCCGG
CGAGAAAGGGAAGCGCTACGCTCTTCCAAACAGCGAAGTCATGATCCACCAGCCGCTTGGCGGAGCACAGGGTCAGGCGA
CTGAAATTGAAATCGCGGCGAAGCGCATTCTTTCATTGCGCGACAAGCTGAACAAAATTCTTGCAGAGCGCACTGGACAG
CCGCTTGAAGTGATCGAGCGCGATACAGACCGCGACAACTTCAAAACGGCTGAAGAAGCAAAAGAATACGGCTTGATCGA
TAAAGTGCTCACACGCAATATCGACGCACAGAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J6GJE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

92.386

99.495

0.919
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.229

96.97

0.662
  clpP Streptococcus thermophilus LMG 18311

58.031

97.475

0.566
  clpP Streptococcus thermophilus LMD-9

58.031

97.475

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

56.995

97.475

0.556
  clpP Streptococcus pneumoniae Rx1

56.995

97.475

0.556
  clpP Streptococcus pneumoniae D39

56.995

97.475

0.556
  clpP Streptococcus pneumoniae R6

56.995

97.475

0.556
  clpP Streptococcus pneumoniae TIGR4

56.995

97.475

0.556
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.922

97.475

0.535