Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   H2R00_RS17380 Genome accession   NZ_CP059494
Coordinates   3522301..3522873 (+) Length   190 a.a.
NCBI ID   WP_003185937.1    Uniprot ID   A0A415J8E4
Organism   Bacillus haynesii strain P19     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3517301..3527873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS17355 cls 3517790..3519238 (-) 1449 WP_182071105.1 cardiolipin synthase -
  H2R00_RS17360 - 3519487..3519930 (+) 444 WP_154996080.1 YwnF family protein -
  H2R00_RS17365 - 3519980..3520477 (-) 498 WP_154996078.1 GNAT family N-acetyltransferase -
  H2R00_RS17370 - 3520671..3521546 (+) 876 WP_154996076.1 M23 family metallopeptidase -
  H2R00_RS17375 - 3521682..3522287 (+) 606 WP_182069939.1 sigma-70 family RNA polymerase sigma factor -
  H2R00_RS17380 clpP 3522301..3522873 (+) 573 WP_003185937.1 ATP-dependent Clp protease proteolytic subunit Regulator
  H2R00_RS17385 - 3523299..3523694 (-) 396 WP_182069940.1 hypothetical protein -
  H2R00_RS17390 - 3523921..3524271 (-) 351 WP_003185936.1 P-II family nitrogen regulator -
  H2R00_RS17395 - 3524290..3525501 (-) 1212 WP_154996072.1 ammonium transporter -
  H2R00_RS17400 - 3525662..3526960 (-) 1299 WP_182069941.1 hemolysin family protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21049.23 Da        Isoelectric Point: 5.3785

>NTDB_id=470084 H2R00_RS17380 WP_003185937.1 3522301..3522873(+) (clpP) [Bacillus haynesii strain P19]
MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFNDDLANRVTAQLLFLSAEDNEKDISIYINSPGGSTSAGYAILDT
MDYVKPDVRTICVGMAASMGAILLAGGAKGKRYALKNSEIMIHQPLGGVKGQATDMEISAKRIIKLREKIERFFHERTGQ
PIEKLKADMERDYFMDADEAKAYGVIDAVL

Nucleotide


Download         Length: 573 bp        

>NTDB_id=470084 H2R00_RS17380 WP_003185937.1 3522301..3522873(+) (clpP) [Bacillus haynesii strain P19]
ATGAACACCATTCCTTACGTCATTGAGAAAACGGCTGCGGGAGAAAGATCGTACGATATTTTTTCCAGACTTTTAAAAGA
CCGGATCATTATGATCGGCTCTGAATTCAACGATGACCTCGCCAATCGGGTCACCGCCCAATTGCTGTTTTTGTCAGCGG
AGGACAATGAAAAAGACATTTCGATCTATATCAACAGCCCAGGCGGATCAACTTCAGCGGGATATGCGATTTTGGATACG
ATGGATTATGTGAAGCCGGATGTCCGCACGATCTGCGTCGGAATGGCAGCTTCTATGGGAGCGATTCTCCTCGCCGGCGG
AGCAAAAGGCAAACGGTATGCGCTCAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGCGTCAAAGGACAGGCGA
CAGACATGGAGATTTCAGCGAAGCGAATCATCAAACTGAGGGAAAAAATCGAGCGCTTCTTTCACGAACGAACGGGCCAG
CCCATTGAAAAACTAAAAGCCGACATGGAACGCGATTACTTTATGGATGCGGACGAAGCGAAGGCATACGGTGTTATTGA
TGCTGTTTTGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J8E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

65.263

100

0.653
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.567

98.421

0.616
  clpP Streptococcus thermophilus LMD-9

55.556

99.474

0.553
  clpP Streptococcus pneumoniae Rx1

55.556

99.474

0.553
  clpP Streptococcus pneumoniae D39

55.556

99.474

0.553
  clpP Streptococcus thermophilus LMG 18311

55.556

99.474

0.553
  clpP Streptococcus pneumoniae R6

55.556

99.474

0.553
  clpP Streptococcus pneumoniae TIGR4

55.556

99.474

0.553
  clpP Streptococcus mutans UA159

55.026

99.474

0.547
  clpP Streptococcus pyogenes JRS4

54.497

99.474

0.542
  clpP Streptococcus pyogenes MGAS315

54.497

99.474

0.542
  clpP Lactococcus lactis subsp. cremoris KW2

51.852

99.474

0.516
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.323

99.474

0.511