Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FOLKNPGA_RS11115 Genome accession   NZ_CP059400
Coordinates   2524757..2525188 (+) Length   143 a.a.
NCBI ID   WP_220471037.1    Uniprot ID   -
Organism   Legionella sp. PC1000     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2519757..2530188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOLKNPGA_RS11105 (FOLKNPGA_02255) letS 2520204..2522942 (+) 2739 WP_182352839.1 two-component system sensor histidine kinase LetS Regulator
  FOLKNPGA_RS11110 (FOLKNPGA_02256) - 2523142..2524386 (+) 1245 WP_182349974.1 6-phosphofructokinase -
  FOLKNPGA_RS11115 (FOLKNPGA_02257) pilA 2524757..2525188 (+) 432 WP_220471037.1 pilin Machinery gene
  FOLKNPGA_RS11120 (FOLKNPGA_02258) - 2525260..2525589 (+) 330 WP_182349975.1 BolA family transcriptional regulator -
  FOLKNPGA_RS11125 (FOLKNPGA_02259) - 2525976..2527376 (+) 1401 WP_182349976.1 APC family permease -
  FOLKNPGA_RS11130 (FOLKNPGA_02260) - 2527454..2527633 (-) 180 WP_019231979.1 Trm112 family protein -
  FOLKNPGA_RS11135 (FOLKNPGA_02261) tsaB 2527651..2528301 (-) 651 WP_182349977.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 14803.00 Da        Isoelectric Point: 6.1613

>NTDB_id=469387 FOLKNPGA_RS11115 WP_220471037.1 2524757..2525188(+) (pilA) [Legionella sp. PC1000]
MKEKGFTLIELMIVVAIVGILAAIAIPAYQDYVVRARVTEGLSVASSAKTTVSENATTGNADLSQGWSFANPTPNVQSVV
VTAATGVITITYTALAQNVVLTLTPQANGAALVAGTPPTDPITWVCAVNNAANNRYVPANCRI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=469387 FOLKNPGA_RS11115 WP_220471037.1 2524757..2525188(+) (pilA) [Legionella sp. PC1000]
ATGAAAGAAAAAGGTTTTACTTTAATTGAATTAATGATAGTGGTAGCAATAGTTGGTATTCTTGCCGCAATTGCTATCCC
GGCATATCAGGATTACGTCGTCAGAGCTCGCGTTACAGAAGGGTTAAGTGTTGCTTCTTCAGCAAAAACAACTGTCTCTG
AAAATGCAACAACAGGTAACGCTGACTTAAGTCAGGGCTGGAGTTTTGCAAACCCTACACCTAATGTGCAAAGTGTTGTT
GTTACTGCTGCTACGGGTGTAATCACAATTACTTATACAGCGCTTGCACAAAACGTAGTTCTTACTTTAACGCCACAAGC
TAACGGAGCCGCCCTTGTTGCTGGAACTCCACCAACTGACCCAATTACCTGGGTTTGTGCCGTAAATAATGCTGCGAACA
ACCGATACGTCCCTGCAAACTGCAGAATATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(34-142)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

53.165

100

0.587
  pilA2 Legionella pneumophila strain ERS1305867

54.054

100

0.559
  pilA2 Legionella pneumophila str. Paris

53.378

100

0.552
  comP Acinetobacter baylyi ADP1

45.806

100

0.496
  pilE Neisseria gonorrhoeae strain FA1090

37.5

100

0.42
  pilA/pilA1 Eikenella corrodens VA1

36.943

100

0.406