Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   H0N29_RS09690 Genome accession   NZ_CP059040
Coordinates   2062984..2063364 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 19606     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2057984..2068364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0N29_RS09660 (H0N29_09660) tadA 2058103..2058606 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  H0N29_RS09665 (H0N29_09665) - 2058613..2059737 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  H0N29_RS09670 (H0N29_09670) ung 2059734..2060447 (-) 714 WP_001177525.1 uracil-DNA glycosylase -
  H0N29_RS09675 (H0N29_09675) - 2060498..2061094 (-) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  H0N29_RS09680 (H0N29_09680) gspK 2061324..2062283 (-) 960 WP_000301461.1 type II secretion system minor pseudopilin GspK -
  H0N29_RS09685 (H0N29_09685) xcpW 2062283..2062984 (-) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  H0N29_RS09690 (H0N29_09690) xcpV 2062984..2063364 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  H0N29_RS09695 (H0N29_09695) - 2063354..2063908 (-) 555 WP_000841370.1 type II secretion system protein -
  H0N29_RS09700 (H0N29_09700) - 2063918..2064526 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  H0N29_RS09705 (H0N29_09705) - 2064564..2065337 (-) 774 WP_000497298.1 TatD family hydrolase -
  H0N29_RS09710 (H0N29_09710) - 2065355..2065696 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  H0N29_RS09715 (H0N29_09715) - 2065708..2066688 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  H0N29_RS09720 (H0N29_09720) kdsB 2066700..2067461 (-) 762 WP_000680698.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=466601 H0N29_RS09690 WP_000836911.1 2062984..2063364(-) (xcpV) [Acinetobacter baumannii strain ATCC 19606]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=466601 H0N29_RS09690 WP_000836911.1 2062984..2063364(-) (xcpV) [Acinetobacter baumannii strain ATCC 19606]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1