Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   I6J32_RS07145 Genome accession   NZ_CP069437
Coordinates   1470047..1470721 (+) Length   224 a.a.
NCBI ID   WP_227522762.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1202     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1465047..1475721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J32_RS07120 (I6J32_07125) pth 1465120..1465707 (+) 588 WP_204155059.1 aminoacyl-tRNA hydrolase -
  I6J32_RS07125 (I6J32_07130) panD 1465922..1466302 (+) 381 WP_036589204.1 aspartate 1-decarboxylase -
  I6J32_RS07130 (I6J32_07135) - 1466403..1467029 (-) 627 WP_128680327.1 superoxide dismutase -
  I6J32_RS07135 (I6J32_07140) rdgB 1467569..1468219 (+) 651 WP_204155060.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  I6J32_RS07140 (I6J32_07145) tig 1468528..1469880 (+) 1353 WP_204155061.1 trigger factor -
  I6J32_RS07145 (I6J32_07150) clpP 1470047..1470721 (+) 675 WP_227522762.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  I6J32_RS07150 (I6J32_07155) clpX 1470778..1472061 (+) 1284 WP_204155062.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  I6J32_RS07155 (I6J32_07160) - 1472143..1472667 (-) 525 WP_204155063.1 hypothetical protein -
  I6J32_RS07160 (I6J32_07165) - 1472685..1473272 (-) 588 WP_204155064.1 HD domain-containing protein -
  I6J32_RS07165 (I6J32_07170) - 1473309..1473884 (-) 576 WP_095356730.1 hydrolase -
  I6J32_RS07170 (I6J32_07175) - 1473974..1474516 (-) 543 WP_204155065.1 hypothetical protein -
  I6J32_RS07175 (I6J32_07180) - 1474647..1474904 (-) 258 WP_007117256.1 YfhL family 4Fe-4S dicluster ferredoxin -
  I6J32_RS07180 (I6J32_07185) - 1474969..1475376 (-) 408 WP_204155066.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24896.47 Da        Isoelectric Point: 4.9809

>NTDB_id=466588 I6J32_RS07145 WP_227522762.1 1470047..1470721(+) (clpP) [Moraxella osloensis strain FDAARGOS_1202]
MLEKFLDSPFATSQIQNTVTRDLLSPQSALVPMVVEQSARGERSFDIYSRLLRERVVFLAGQVEDHMANLIVAQLLFLEA
ENPEKDIHLYINSPGGSVSAGLAVFDTMNFIQPQVSTICMGGAYSMGSFLLAAGEKGKRYSLANARVMIHQPSGGAQGQA
TDIEINAREILKIRERLNKILAERTGQPLEKIARDVERDYWLDAQEAKEYGLIDEVLEKRPSIA

Nucleotide


Download         Length: 675 bp        

>NTDB_id=466588 I6J32_RS07145 WP_227522762.1 1470047..1470721(+) (clpP) [Moraxella osloensis strain FDAARGOS_1202]
ATGTTAGAAAAATTCTTGGACTCGCCTTTCGCGACGAGTCAAATTCAAAATACCGTAACCCGTGACCTGTTGTCACCACA
AAGTGCTTTAGTACCTATGGTGGTCGAGCAATCGGCTCGCGGTGAGCGCTCATTTGACATCTATTCTCGCTTATTGCGTG
AGCGTGTGGTGTTCTTAGCCGGTCAAGTTGAAGACCACATGGCGAATTTAATTGTCGCCCAGTTGTTATTCCTAGAAGCG
GAAAATCCAGAAAAAGACATTCACTTATACATTAATTCACCAGGTGGCTCTGTGAGTGCGGGTCTTGCGGTTTTTGACAC
CATGAACTTTATCCAGCCACAAGTGTCAACGATTTGTATGGGCGGTGCTTATAGCATGGGTTCATTCTTACTGGCAGCGG
GTGAAAAAGGTAAACGCTATTCCTTAGCCAATGCGCGTGTGATGATTCACCAACCATCAGGTGGGGCACAAGGTCAAGCG
ACCGATATTGAAATCAATGCGCGTGAAATCCTAAAAATCCGTGAACGCTTGAATAAAATCTTGGCAGAACGTACCGGTCA
GCCACTTGAGAAAATCGCCCGTGATGTAGAGCGTGACTATTGGCTAGATGCCCAAGAAGCCAAAGAATACGGTCTGATTG
ATGAAGTATTAGAAAAACGTCCAAGTATTGCTTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(40-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

66.489

83.929

0.558
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.632

84.821

0.531
  clpP Lactococcus lactis subsp. cremoris KW2

59.375

85.714

0.509
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

57.292

85.714

0.491
  clpP Streptococcus pneumoniae R6

57.368

84.821

0.487
  clpP Streptococcus pneumoniae Rx1

57.368

84.821

0.487
  clpP Streptococcus pneumoniae D39

57.368

84.821

0.487
  clpP Streptococcus pneumoniae TIGR4

57.368

84.821

0.487
  clpP Streptococcus thermophilus LMG 18311

56.842

84.821

0.482
  clpP Streptococcus thermophilus LMD-9

56.842

84.821

0.482
  clpP Streptococcus mutans UA159

54.822

87.946

0.482
  clpP Streptococcus pyogenes JRS4

56.021

85.268

0.478
  clpP Streptococcus pyogenes MGAS315

56.021

85.268

0.478