Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   JSW75_RS18610 Genome accession   NZ_CP069386
Coordinates   3841868..3842491 (+) Length   207 a.a.
NCBI ID   WP_216685311.1    Uniprot ID   -
Organism   Escherichia coli strain XH1815     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3836868..3847491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSW75_RS18590 (JSW75_18490) ampG 3837261..3838736 (-) 1476 WP_000098429.1 muropeptide MFS transporter AmpG -
  JSW75_RS18595 (JSW75_18495) yajG 3838780..3839358 (-) 579 WP_001295326.1 lipoprotein -
  JSW75_RS18600 (JSW75_18500) bolA 3839663..3839980 (+) 318 WP_000973448.1 transcriptional regulator BolA -
  JSW75_RS18605 (JSW75_18505) tig 3840324..3841622 (+) 1299 WP_001198386.1 trigger factor -
  JSW75_RS18610 (JSW75_18510) clpP 3841868..3842491 (+) 624 WP_216685311.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  JSW75_RS18615 (JSW75_18515) clpX 3842617..3843891 (+) 1275 WP_000130305.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  JSW75_RS18620 (JSW75_18520) lon 3844079..3846433 (+) 2355 WP_072647299.1 endopeptidase La -
  JSW75_RS18625 (JSW75_18525) hupB 3846642..3846914 (+) 273 WP_001043542.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23198.70 Da        Isoelectric Point: 5.6032

>NTDB_id=466442 JSW75_RS18610 WP_216685311.1 3841868..3842491(+) (clpP) [Escherichia coli strain XH1815]
MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSP
GGVITAGMSIYDTMQFIKPDVSIICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK
GRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN

Nucleotide


Download         Length: 624 bp        

>NTDB_id=466442 JSW75_RS18610 WP_216685311.1 3841868..3842491(+) (clpP) [Escherichia coli strain XH1815]
ATGTCATACAGCGGCGAACGAGATAACTTTGCACCCCATATGGCGCTGGTGCCGATGGTCATTGAACAGACCTCACGCGG
TGAGCGCTCTTTTGATATCTATTCTCGTCTACTTAAGGAACGCGTCATTTTTCTGACTGGCCAGGTTGAAGACCACATGG
CTAACCTGATTGTGGCGCAGATGCTGTTCCTGGAAGCGGAAAACCCAGAAAAAGATATCTATCTGTACATTAACTCCCCA
GGCGGGGTGATCACTGCCGGGATGTCTATCTATGACACCATGCAGTTTATCAAGCCTGATGTCAGCATCATCTGTATGGG
CCAGGCGGCCTCGATGGGCGCTTTCTTGCTGACCGCAGGGGCAAAAGGTAAACGTTTTTGCCTGCCGAATTCGCGCGTGA
TGATTCACCAACCGTTGGGCGGCTACCAGGGCCAGGCGACCGATATCGAAATTCATGCCCGTGAAATTCTGAAAGTTAAA
GGGCGCATGAATGAACTTATGGCGCTTCATACGGGTCAATCATTAGAACAGATTGAACGTGATACCGAGCGCGATCGCTT
CCTTTCCGCCCCTGAAGCGGTGGAATACGGTCTGGTCGATTCGATTCTGACCCATCGTAATTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

69.271

92.754

0.643
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.085

90.821

0.618
  clpP Lactococcus lactis subsp. cremoris KW2

56.186

93.72

0.527
  clpP Streptococcus pneumoniae R6

54.639

93.72

0.512
  clpP Streptococcus pneumoniae TIGR4

54.639

93.72

0.512
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.639

93.72

0.512
  clpP Streptococcus pneumoniae Rx1

54.639

93.72

0.512
  clpP Streptococcus pneumoniae D39

54.639

93.72

0.512
  clpP Streptococcus thermophilus LMD-9

54.404

93.237

0.507
  clpP Streptococcus thermophilus LMG 18311

54.404

93.237

0.507
  clpP Streptococcus pyogenes JRS4

54.737

91.787

0.502
  clpP Streptococcus pyogenes MGAS315

54.737

91.787

0.502
  clpP Streptococcus mutans UA159

53.368

93.237

0.498