Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HZU75_RS02365 Genome accession   NZ_CP058952
Coordinates   507711..509111 (-) Length   466 a.a.
NCBI ID   WP_180307614.1    Uniprot ID   A0A7D5V898
Organism   Chitinibacter fontanus strain STM-7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 502711..514111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZU75_RS02330 (HZU75_02330) - 503343..503951 (-) 609 WP_180307608.1 flavin prenyltransferase UbiX -
  HZU75_RS02335 (HZU75_02335) - 503953..504534 (-) 582 WP_180307609.1 Gx transporter family protein -
  HZU75_RS02340 (HZU75_02340) - 504515..504898 (-) 384 WP_228028159.1 NusG domain II-containing protein -
  HZU75_RS02345 (HZU75_02345) rapZ 504888..505748 (-) 861 WP_180307610.1 RNase adapter RapZ -
  HZU75_RS02350 (HZU75_02350) hprK 505748..506692 (-) 945 WP_180307611.1 HPr(Ser) kinase/phosphatase -
  HZU75_RS02355 (HZU75_02355) - 506775..507248 (-) 474 WP_180307612.1 PTS sugar transporter subunit IIA -
  HZU75_RS02360 (HZU75_02360) hpf 507354..507680 (-) 327 WP_180307613.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  HZU75_RS02365 (HZU75_02365) rpoN/rpoN1 507711..509111 (-) 1401 WP_180307614.1 RNA polymerase factor sigma-54 Machinery gene
  HZU75_RS02370 (HZU75_02370) lptB 509133..509855 (-) 723 WP_180307615.1 LPS export ABC transporter ATP-binding protein -
  HZU75_RS02375 (HZU75_02375) lptA 509861..510376 (-) 516 WP_180307616.1 lipopolysaccharide transport periplasmic protein LptA -
  HZU75_RS02380 (HZU75_02380) lptC 510330..510899 (-) 570 WP_180307617.1 LPS export ABC transporter periplasmic protein LptC -
  HZU75_RS02385 (HZU75_02385) - 510939..511454 (-) 516 WP_180307618.1 HAD family hydrolase -
  HZU75_RS02390 (HZU75_02390) - 511522..512490 (-) 969 WP_180307619.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52386.52 Da        Isoelectric Point: 4.6768

>NTDB_id=466129 HZU75_RS02365 WP_180307614.1 507711..509111(-) (rpoN/rpoN1) [Chitinibacter fontanus strain STM-7]
MKQSLQLRMSQQLNLTPQLQQSIKLLQLSTLDFNQEVEQYLADNPLLEREESAGDSPDSLEVAAPETTDSSTDHVDDLDG
LRWDEVKNGGSYDEDDEHDPTLRVAIELSLRDHLLAQARLMGLSARDHALLALLIEALDEDGLLTQDLEEIFAQLPAEIV
QELELEVDELRIAHQYLMQLEPLGVGTRSLSECLLLQLKSAPNTPEYLLARRLIETGLELLAIRDFAKLKKQFQCDDDQL
RQAQQIIRALNPRPAANWGADTTRYVVPDVLVQKLRGRWTVRLNQAAQPKIKVNEMYARLLQGEVGDNLASALQEARWLI
KSIEQRGSTILRVAQAIVARQQAFFEYGEVAMKPLVLRDIAEELDLHESTISRVTTQKFMLTPRGVLEYKYFFGSHVEND
SGGENSATSIKALIKQLVAQENPKKPLSDSAITEELARQGVAVARRTVAKYREALNIAPASQRKSL

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=466129 HZU75_RS02365 WP_180307614.1 507711..509111(-) (rpoN/rpoN1) [Chitinibacter fontanus strain STM-7]
ATGAAGCAATCTTTGCAGCTGCGCATGTCGCAGCAGCTCAATTTAACGCCACAATTACAGCAGTCGATCAAACTGTTGCA
GCTTTCTACGCTCGATTTTAATCAGGAAGTTGAGCAATACTTGGCAGATAACCCGTTGCTAGAGAGGGAAGAGTCGGCTG
GTGACTCGCCGGACTCCCTCGAGGTCGCCGCTCCTGAGACGACTGACTCCAGTACGGATCATGTGGATGATTTGGATGGA
CTTCGTTGGGACGAGGTAAAAAATGGTGGTTCATACGACGAGGATGATGAGCACGACCCCACTTTACGAGTCGCGATTGA
ATTAAGTTTGCGTGATCATTTATTGGCGCAAGCCCGTCTGATGGGGCTTTCTGCGCGTGATCATGCCCTGCTTGCCTTGT
TAATTGAAGCCTTGGATGAAGATGGCTTACTCACGCAAGACTTAGAGGAAATTTTTGCGCAATTACCTGCTGAAATAGTG
CAGGAGCTTGAGCTTGAAGTTGATGAGTTGCGAATCGCACATCAATATTTAATGCAGCTCGAGCCGCTGGGGGTTGGCAC
TCGATCCTTGTCGGAATGTCTGTTGCTGCAATTGAAATCTGCTCCCAATACTCCTGAGTATTTGTTGGCGCGTCGCTTAA
TTGAGACTGGATTGGAGTTATTAGCGATCCGCGATTTTGCCAAGCTAAAAAAACAGTTTCAATGTGATGATGATCAATTG
CGTCAGGCTCAGCAGATTATCCGGGCCTTGAACCCTAGACCAGCGGCCAACTGGGGCGCGGATACAACACGTTATGTCGT
GCCTGATGTGCTGGTGCAAAAGTTACGTGGTCGCTGGACTGTGCGCCTGAATCAGGCTGCGCAGCCCAAAATTAAAGTCA
ATGAAATGTATGCGCGGCTGTTGCAAGGTGAAGTTGGAGACAATCTTGCTAGCGCTTTGCAAGAAGCTAGGTGGTTGATT
AAAAGCATAGAACAGCGTGGCAGTACGATTTTGCGGGTGGCCCAAGCGATCGTTGCGCGGCAGCAAGCGTTTTTTGAATA
TGGCGAAGTGGCCATGAAACCGCTGGTGCTGCGTGATATTGCTGAAGAGCTCGATTTACACGAATCAACGATTTCGCGCG
TGACAACGCAAAAATTTATGCTGACACCGCGCGGCGTTTTGGAGTACAAATACTTCTTCGGTAGTCATGTTGAAAACGAC
AGCGGCGGCGAAAATTCAGCAACATCGATCAAAGCTTTGATCAAACAACTGGTAGCACAGGAAAATCCAAAGAAACCATT
ATCGGATAGTGCTATAACAGAAGAACTCGCAAGGCAAGGTGTCGCAGTAGCGCGGCGCACCGTTGCCAAGTATCGGGAGG
CGCTGAACATTGCGCCTGCCAGTCAGCGCAAAAGCCTATAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(309-464)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(107-297)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D5V898

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.119

100

0.521