Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SSU16085_RS04725 Genome accession   NZ_CP058740
Coordinates   1001190..1002992 (+) Length   600 a.a.
NCBI ID   WP_024381434.1    Uniprot ID   A0A075SEB5
Organism   Streptococcus suis strain 16085/3b     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 996190..1007992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS04710 (SSU16085_00961) - 997204..997797 (-) 594 WP_024394673.1 DUF1361 domain-containing protein -
  SSU16085_RS04715 (SSU16085_00962) metG 997954..999957 (+) 2004 WP_044675531.1 methionine--tRNA ligase -
  SSU16085_RS04720 (SSU16085_00963) coiA 1000018..1000959 (+) 942 WP_024381435.1 competence protein CoiA Machinery gene
  SSU16085_RS04725 (SSU16085_00964) pepF 1001190..1002992 (+) 1803 WP_024381434.1 oligoendopeptidase F Regulator
  SSU16085_RS04730 (SSU16085_00965) - 1002994..1003434 (+) 441 WP_024394669.1 hypothetical protein -
  SSU16085_RS04735 (SSU16085_00966) - 1003450..1003998 (+) 549 WP_002938103.1 DUF6630 family protein -
  SSU16085_RS04740 (SSU16085_00967) - 1004073..1004792 (+) 720 WP_043032894.1 O-methyltransferase -
  SSU16085_RS04745 (SSU16085_00968) prsA 1004853..1005854 (+) 1002 WP_024394667.1 peptidylprolyl isomerase PrsA -
  SSU16085_RS04750 (SSU16085_00969) - 1006119..1006604 (+) 486 WP_024394666.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69230.45 Da        Isoelectric Point: 4.5596

>NTDB_id=465151 SSU16085_RS04725 WP_024381434.1 1001190..1002992(+) (pepF) [Streptococcus suis strain 16085/3b]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYAAFSQAFAFYEPEFMAITEEKLEAFKVEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDDHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=465151 SSU16085_RS04725 WP_024381434.1 1001190..1002992(+) (pepF) [Streptococcus suis strain 16085/3b]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGATTTAACCACTATTTTCCCAACCGATGAAGCCTGGGA
AGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAACTTGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGCGAAGGAAAATATCAGGAATTTCAAGCTAAGGCCATGGGCTTGTATGCTGCCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCTATTACTGAAGAGAAATTGGAAGCCTTTAAAGTAGAAGAACCGGCTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTCTGGCAGCCAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTCCTTGCGGCAACC
AGCGAGATTTTTGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCTAGCCTGCGTTTCCCAGAAATCGCAGATGA
AGACGATCACTTGGTGCCACTTTCACACGGAAACTACATCCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAAGCTATGTACGGTACCTACGAGCAGTTCCAGCATACATACGCTAAGACCCTTCAGTCTAATGTCAAAGTCAAT
AACCTGAAAGCTCGTTTACGGAAGTACGACTCAGCTCGCCACGCATCACTTGCAGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCAGTCAACAAGCACCTTCCGCTCTTGCATCGTTACATCAATTTGCGTAAGAAGCTCCTGGGGA
TTGATGACTTGAAGATGTACGATATGTACACACCATTGTCAGATTTCAGCACCAAGATTTCTTATGAAGATGCTCTTAAA
AAATGTCAAGAAACCTTGGAAATCTTCGGCGAGGATTATTCGGCTATTGTGAAGGAAGCCTTCGAAAACCGCTGGATTGA
TGTCCATGTTAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGACATTCTCTTCATTCCATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGCCATTATTCACTTTTCTTGGCTGAAATTGCTTCAACTACCAACGAAAACCTTCTGACTGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTAAATCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAGGAAGGTCAGGTCTTGACAGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACATTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCAGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AATGTCATCGCTAAGGCTGGCGTAGACATGACCAAGGAAGATTACCTCAATGATGCCTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SEB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.667

100

0.697