Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SSU16085_RS04995 Genome accession   NZ_CP058740
Coordinates   1056334..1057173 (+) Length   279 a.a.
NCBI ID   WP_024417501.1    Uniprot ID   -
Organism   Streptococcus suis strain 16085/3b     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1051334..1062173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS04965 (SSU16085_01013) - 1051810..1052688 (+) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -
  SSU16085_RS04970 (SSU16085_01014) atpD 1052708..1054114 (+) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  SSU16085_RS04975 (SSU16085_01015) - 1054124..1054540 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  SSU16085_RS04980 - 1054600..1054824 (+) 225 WP_024387485.1 DUF1146 family protein -
  SSU16085_RS04985 (SSU16085_01016) murA 1054849..1056120 (+) 1272 WP_192063035.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SSU16085_RS04990 (SSU16085_01017) - 1056113..1056304 (+) 192 WP_002936005.1 DNA-directed RNA polymerase subunit beta -
  SSU16085_RS04995 (SSU16085_01018) endA 1056334..1057173 (+) 840 WP_024417501.1 DNA/RNA non-specific endonuclease Machinery gene
  SSU16085_RS05000 (SSU16085_01019) - 1057360..1058913 (+) 1554 WP_013730405.1 MFS transporter -
  SSU16085_RS05005 (SSU16085_01020) - 1058969..1059997 (+) 1029 WP_192063036.1 sugar kinase -
  SSU16085_RS05010 (SSU16085_01021) uidA 1060013..1061812 (+) 1800 WP_192063037.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30187.41 Da        Isoelectric Point: 6.2370

>NTDB_id=465153 SSU16085_RS04995 WP_024417501.1 1056334..1057173(+) (endA) [Streptococcus suis strain 16085/3b]
MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGIPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRIRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=465153 SSU16085_RS04995 WP_024417501.1 1056334..1057173(+) (endA) [Streptococcus suis strain 16085/3b]
ATGGCGAAGAAAAATGTAAGAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTCGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCATAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGTAATCAAACAGATTTAGATGCATCGGTTGCCAGTGTACCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTATCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.915

84.588

0.591
  endA Streptococcus pneumoniae D39

69.915

84.588

0.591
  endA Streptococcus pneumoniae R6

69.915

84.588

0.591
  endA Streptococcus pneumoniae TIGR4

69.915

84.588

0.591