Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   HYO64_RS01905 Genome accession   NZ_CP058729
Coordinates   400424..401482 (+) Length   352 a.a.
NCBI ID   WP_002014066.1    Uniprot ID   N9LI98
Organism   Acinetobacter baumannii strain M164-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 395424..406482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS01890 - 396529..396861 (+) 333 WP_000169602.1 DUF7709 family protein -
  HYO64_RS01895 - 396864..397688 (+) 825 WP_001990541.1 putative RNA methyltransferase -
  HYO64_RS01900 ponA 397706..400261 (-) 2556 WP_000736672.1 penicillin-binding protein PBP1a -
  HYO64_RS01905 pilM 400424..401482 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  HYO64_RS01910 pilN 401482..402123 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  HYO64_RS01915 pilO 402120..402860 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  HYO64_RS01920 pilP 402871..403398 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  HYO64_RS01925 pilQ 403460..405586 (+) 2127 WP_114155179.1 type IV pilus secretin PilQ Machinery gene
  HYO64_RS01930 aroK 405598..406167 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39032.59 Da        Isoelectric Point: 4.4618

>NTDB_id=465053 HYO64_RS01905 WP_002014066.1 400424..401482(+) (pilM) [Acinetobacter baumannii strain M164-3]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEALERAMNLANPQTTHAAI
AVPTSTVIHKTIEMDADMSDDEREVQIRVDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRTENVETRVEVLEL
ADLNPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
ASRAKKDRSLPDDYEIEVLDPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=465053 HYO64_RS01905 WP_002014066.1 400424..401482(+) (pilM) [Acinetobacter baumannii strain M164-3]
GTGCTCAGGTTATATCGTAAACCTAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTCAAGAACGGTAAATATTGGGTAGAAAGCTATGCTTTGATGCCTTTACCCGAAAACAGTGTAGTTGAAAAAAATA
TCTTAAATCCAGAAGCAGTTGCAGAGGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCAAACCACTCATGCTGCAATT
GCTGTTCCGACATCGACGGTTATTCATAAAACTATCGAAATGGATGCAGATATGAGCGATGACGAACGCGAAGTTCAGAT
TCGTGTAGATGCGGAGCAGTATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTTTGAGGTTCTGCCGGATCGTCTTG
CGAATCCAAATCGTGTAAATGTGCTCTTGGTCGCCACAAGAACAGAAAACGTTGAAACACGCGTTGAAGTGCTTGAATTG
GCAGATTTAAATCCTAAATTGGCTGATGTCGAAAGTTACGCGGTTGAGCGCGCTTTTAGCGTGTTTGCTGATAGCTTACC
GATGGGTGCAAATACCATAGGGATTTTAGATATCGGTCATACCATGACGACATTATCTGTCATGCAAAATGGCAAGATTA
TTTATACACGAGAGCAGGTTTTCGGCGGAAAACAACTTACGCTTGAAATTCAAAGTCGTTATGGTTTGTCTTTAGAAGAA
GCAAGTCGAGCAAAAAAAGATCGCTCTTTACCAGATGATTATGAAATTGAAGTGCTAGACCCATTTCTAGATGCGGTAGT
TCAGCAGGCGGCCCGTTCACTACAATTTTTCTTTTCTTCATCCCAATTTAACGAAATAGACCATATTTTGCTCGCTGGTG
GAAATGCGAATATTCCAGGCCTTGCTAAGCTTTTGCAGCAAAAATTGGGCTACCGTGTCACGATTGCCAACCCGTTTTTA
CAAATGGGCTTTTCTCCTCAAGTCGATGTTCAAAAAATTGAAAATGATGCTTCATCTTTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LI98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

100

100

1
  comM Acinetobacter nosocomialis M2

99.148

100

0.991
  comM Acinetobacter baylyi ADP1

81.534

100

0.815
  pilM Legionella pneumophila strain ERS1305867

42.09

100

0.423