Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HYO64_RS01925 Genome accession   NZ_CP058729
Coordinates   403460..405586 (+) Length   708 a.a.
NCBI ID   WP_114155179.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M164-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 398460..410586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS01905 pilM 400424..401482 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  HYO64_RS01910 pilN 401482..402123 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  HYO64_RS01915 pilO 402120..402860 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  HYO64_RS01920 pilP 402871..403398 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  HYO64_RS01925 pilQ 403460..405586 (+) 2127 WP_114155179.1 type IV pilus secretin PilQ Machinery gene
  HYO64_RS01930 aroK 405598..406167 (+) 570 WP_000643712.1 shikimate kinase AroK -
  HYO64_RS01935 aroB 406196..407278 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  HYO64_RS01940 - 407294..408169 (+) 876 WP_114155181.1 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76626.19 Da        Isoelectric Point: 7.3160

>NTDB_id=465057 HYO64_RS01925 WP_114155179.1 403460..405586(+) (pilQ) [Acinetobacter baumannii strain M164-3]
MNHVFRQFSMGAVAIAIMQAASAQVSMTNIVPMQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQGLKQSKI
SVATNEASSVDVTSDDQRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTSNKPLPVVSAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTIGTKIPTHLARRLNVNDFATPVSSIDAYNDKGAGVITIQSSGSYEYMAYQAENKLTI
SLKSPPDKSVSSSYKAPSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDQAKALAQTIKLAPIQTDYIRMSYAKAVDVLKLIEDSRDAKGATANRTANSDALALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIELLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVG
GSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQTAKVATGQQVPYLMTTTSGAGSTATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSIAGEAPNGELILNKNNINTN
VLVDNGETVILGGVFEQTTKNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=465057 HYO64_RS01925 WP_114155179.1 403460..405586(+) (pilQ) [Acinetobacter baumannii strain M164-3]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCTATTGCGATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAACATTGTACCAATGCAAATTGCAGGTCAGGGCACAGAAATTAGAGTCATGTTTAATGGCTTGCCACCACAACCAC
AAGCTTACCAACTTGAAAATCCTTCACGTTTAATCCTTGATTTTGATAAGGCACAGCAAGGTTTAAAACAGTCTAAAATT
AGTGTTGCAACTAATGAGGCTAGTTCTGTAGATGTTACTTCAGATGACCAGCGTTCACGTTTAACTGTAAACCTAAAAGA
TGCTGGAGCATTTACAACACGAGTAGAAGGCAATACTTTTATTTTAAAAATTAATTCTGCTCAAACAAGTAATAAGCCGC
TACCTGTGGTCTCAGCACAACCACAAGGTGTTTCAAATATTGGCTTTCAACGTGGTAGTCAGGGAGAAGGCCTGGTTGTT
GTAGATCTTTTAGGAAGTAATACGCCTGTAGATGTTCAGCAGCAGGGCAGTAAAGTTGTTATAAGAACAATAGGTACAAA
AATCCCGACACATTTAGCGCGTCGCTTAAATGTAAATGATTTTGCAACCCCGGTTTCAAGTATCGATGCTTATAATGATA
AAGGGGCTGGTGTAATAACTATCCAGTCCTCTGGTAGCTATGAATATATGGCCTACCAGGCAGAGAATAAGCTCACGATC
AGTTTAAAAAGCCCACCAGATAAAAGTGTATCATCTTCATATAAGGCACCAAGTTATTCAGGGAATAAACTTTCCTTAGA
CTTCCAGGATATTGAAGTTCGTAGGGTTCTGCAGTTACTGGCTGATTTTACAGGCATTAATATGGTAGCTGCTGATAGTG
TACAAGGTAATATCACATTACGTTTAAAAGATGTGCCTTGGGATCAGGCCCTTGATATTATTTTAAAAACTAAAAATCTC
GATAAACGACGTAACGGCAATGTGATTTGGATTGCTCCAGTTGCTGAGTTAATTAAAGCTGAGGATGATCAGGCAAAAGC
TTTAGCGCAAACTATTAAGTTGGCACCGATACAAACAGATTATATTCGGATGAGTTATGCGAAAGCAGTTGATGTGCTTA
AGTTAATCGAAGATTCTCGTGATGCAAAAGGGGCGACCGCAAACCGTACCGCTAATTCAGATGCTCTTGCTTTAGAGAGT
TTGCTGAGCTCTCGTGGTAGTGCGGTTGCTGACACACGTACTAATACCTTAATTGTAAATGATACGGCACAAAATATTGA
TAAAGTTCGTAAAATGATTGAGTTGCTTGATGTGCAAGTTAAACAGGTCATGGTTGAGGCACGTATTGTGAGAGCTTCTA
CGTCATTTACGAAAGAGCTTGGTGTGAAGTGGGGGATTCTTTCACAAGGCATTACCAATAATAAAAACTTATTGGTTGGC
GGGAGTGAAACAACCTTGTGGAATTTACGTGAGCCGAAGAAAGATGAAACTACGGGAGGCTATAAATATACGATTGAGCG
TCCAGATAACTTAAACGTGGATTTAGGGGTCACTAATCCCGCAGGAAGTATCGCTTTCGGTTTAATTAGTATGTCTGACT
TTATGTTGGATCTTGAATTGTCTGCTTTACAAGCCGATGGTTATGGTGAGGTTATTTCTACCCCTAAAGTCATGACTGCC
GATAAACAAACTGCGAAAGTTGCAACAGGTCAACAAGTTCCTTATCTAATGACAACCACTTCTGGTGCTGGATCTACAGC
AACGACATCATTTAAAGATGCACTCTTAAGTCTTGATGTGACACCGAGTATTACACCTGATGGCAAAATTCAAATGAAGT
TGGATATTTCTAAGGACTCTATAGCAGGTGAAGCGCCTAATGGCGAGTTGATTCTGAATAAGAATAATATCAATACCAAT
GTATTGGTAGATAATGGCGAAACTGTCATTTTAGGTGGAGTATTTGAGCAGACAACAAAGAATTCACAAACCAAAGTTCC
TTTCTTTGGTGATATTCCTGTCGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAGGAGTTGCTGATTT
TCGTTACACCACGAATTGTTAATGACACTTTAGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-442)

AMIN domain (AMIN)

(39-121)

Bacterial type II and III secretion system protein (Secretin)

(542-700)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

89.598

100

0.912
  pilQ Acinetobacter baumannii strain A118

89.459

100

0.911
  comQ Acinetobacter baylyi ADP1

72.765

100

0.736
  pilQ Pseudomonas aeruginosa PAK

39.515

99.011

0.391