Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HYO64_RS01910 Genome accession   NZ_CP058729
Coordinates   401482..402123 (+) Length   213 a.a.
NCBI ID   WP_000201226.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M164-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396482..407123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS01890 - 396529..396861 (+) 333 WP_000169602.1 DUF7709 family protein -
  HYO64_RS01895 - 396864..397688 (+) 825 WP_001990541.1 putative RNA methyltransferase -
  HYO64_RS01900 ponA 397706..400261 (-) 2556 WP_000736672.1 penicillin-binding protein PBP1a -
  HYO64_RS01905 pilM 400424..401482 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  HYO64_RS01910 pilN 401482..402123 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  HYO64_RS01915 pilO 402120..402860 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  HYO64_RS01920 pilP 402871..403398 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  HYO64_RS01925 pilQ 403460..405586 (+) 2127 WP_114155179.1 type IV pilus secretin PilQ Machinery gene
  HYO64_RS01930 aroK 405598..406167 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=465054 HYO64_RS01910 WP_000201226.1 401482..402123(+) (pilN) [Acinetobacter baumannii strain M164-3]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=465054 HYO64_RS01910 WP_000201226.1 401482..402123(+) (pilN) [Acinetobacter baumannii strain M164-3]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

72.596

97.653

0.709