Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HYO64_RS01920 Genome accession   NZ_CP058729
Coordinates   402871..403398 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain M164-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 397871..408398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS01905 pilM 400424..401482 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  HYO64_RS01910 pilN 401482..402123 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  HYO64_RS01915 pilO 402120..402860 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  HYO64_RS01920 pilP 402871..403398 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  HYO64_RS01925 pilQ 403460..405586 (+) 2127 WP_114155179.1 type IV pilus secretin PilQ Machinery gene
  HYO64_RS01930 aroK 405598..406167 (+) 570 WP_000643712.1 shikimate kinase AroK -
  HYO64_RS01935 aroB 406196..407278 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -
  HYO64_RS01940 - 407294..408169 (+) 876 WP_114155181.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=465056 HYO64_RS01920 WP_000695065.1 402871..403398(+) (pilP) [Acinetobacter baumannii strain M164-3]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=465056 HYO64_RS01920 WP_000695065.1 402871..403398(+) (pilP) [Acinetobacter baumannii strain M164-3]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCCCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCAGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGGCCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714