Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HXP32_RS02070 Genome accession   NZ_CP058340
Coordinates   420378..421346 (-) Length   322 a.a.
NCBI ID   WP_002831257.1    Uniprot ID   -
Organism   Campylobacter coli strain 20A420     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415378..426346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXP32_RS02050 (HXP32_02055) - 416893..417525 (-) 633 WP_002777778.1 membrane protein -
  HXP32_RS02055 (HXP32_02060) - 417691..418680 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  HXP32_RS02060 (HXP32_02065) - 418695..419450 (-) 756 WP_002780521.1 ABC transporter ATP-binding protein -
  HXP32_RS02065 (HXP32_02070) - 419447..420385 (-) 939 WP_002831256.1 iron chelate uptake ABC transporter family permease subunit -
  HXP32_RS02070 (HXP32_02075) ceuB 420378..421346 (-) 969 WP_002831257.1 ABC transporter permease Machinery gene
  HXP32_RS02075 (HXP32_02080) - 421479..422372 (-) 894 WP_079749675.1 phospholipase A -
  HXP32_RS02080 (HXP32_02085) - 422471..423046 (-) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  HXP32_RS02085 (HXP32_02090) - 423109..424416 (+) 1308 WP_002822032.1 NFACT family protein -
  HXP32_RS02090 (HXP32_02095) - 424418..424756 (+) 339 WP_002777761.1 hypothetical protein -
  HXP32_RS02095 (HXP32_02100) - 424765..425490 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35503.38 Da        Isoelectric Point: 9.5069

>NTDB_id=463910 HXP32_RS02070 WP_002831257.1 420378..421346(-) (ceuB) [Campylobacter coli strain 20A420]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFAQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=463910 HXP32_RS02070 WP_002831257.1 420378..421346(-) (ceuB) [Campylobacter coli strain 20A420]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCCCCAACTACCGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTGCAGGAGCTTC
TTTTTTTGCTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGCTTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGGCTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTGATCTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGTGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.097

99.689

0.888