Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HWU11_RS01660 Genome accession   NZ_CP058285
Coordinates   342446..342850 (+) Length   134 a.a.
NCBI ID   WP_237008655.1    Uniprot ID   -
Organism   Helicobacter pylori strain BT302     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 337446..347850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU11_RS01625 - 337624..338562 (-) 939 WP_237008651.1 tetraacyldisaccharide 4'-kinase -
  HWU11_RS01630 - 338559..339341 (-) 783 WP_237008652.1 NAD+ synthase -
  HWU11_RS01640 ilvC 339590..340582 (+) 993 WP_237008653.1 ketol-acid reductoisomerase -
  HWU11_RS01645 minD 340606..341412 (+) 807 WP_024368957.1 septum site-determining protein MinD -
  HWU11_RS01650 minE 341409..341642 (+) 234 WP_000051425.1 cell division topological specificity factor MinE -
  HWU11_RS01655 dprA 341649..342449 (+) 801 WP_237008654.1 DNA-processing protein DprA Machinery gene
  HWU11_RS01660 dprB 342446..342850 (+) 405 WP_237008655.1 Holliday junction resolvase RuvX Machinery gene
  HWU11_RS01665 - 342978..343430 (+) 453 WP_237008656.1 tetratricopeptide repeat protein -
  HWU11_RS01670 - 343618..343956 (+) 339 WP_237008657.1 hypothetical protein -
  HWU11_RS01675 - 343940..344500 (+) 561 WP_237008658.1 hypothetical protein -
  HWU11_RS01680 - 344610..345491 (-) 882 WP_237008659.1 RluA family pseudouridine synthase -
  HWU11_RS01685 recJ 345491..347041 (-) 1551 WP_237008660.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15188.66 Da        Isoelectric Point: 9.1737

>NTDB_id=463452 HWU11_RS01660 WP_237008655.1 342446..342850(+) (dprB) [Helicobacter pylori strain BT302]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGK
IVFINEDRSSIEAYENLEHLGKKNRRLAIKDGRLDSLSACGILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=463452 HWU11_RS01660 WP_237008655.1 342446..342850(+) (dprB) [Helicobacter pylori strain BT302]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATTGCTGTGCTTTTAAACGGCGTTATTTTGCCATTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAAGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCACGCATTGAGCATTTTATCAAGCTTGTGGATTTTAAGGGCAAA
ATCGTTTTTATTAATGAAGACAGATCCAGTATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAGGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTGGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.522

100

0.955