Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   HW271_RS07425 Genome accession   NZ_CP058258
Coordinates   1517805..1519784 (-) Length   659 a.a.
NCBI ID   WP_006150231.1    Uniprot ID   F5VZ51
Organism   Streptococcus sp. oral taxon 061 strain F0704     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512805..1524784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW271_RS07400 (HW271_07400) - 1512951..1513151 (-) 201 WP_178895472.1 mechanosensitive ion channel protein MscL -
  HW271_RS07405 (HW271_07405) amiF 1513304..1514230 (-) 927 WP_178895473.1 ATP-binding cassette domain-containing protein Regulator
  HW271_RS07410 (HW271_07410) amiE 1514241..1515308 (-) 1068 WP_006150205.1 ABC transporter ATP-binding protein Regulator
  HW271_RS07415 (HW271_07415) amiD 1515317..1516243 (-) 927 WP_006150281.1 oligopeptide ABC transporter permease OppC Regulator
  HW271_RS07420 (HW271_07420) amiC 1516243..1517739 (-) 1497 WP_178895474.1 ABC transporter permease Regulator
  HW271_RS07425 (HW271_07425) amiA 1517805..1519784 (-) 1980 WP_006150231.1 peptide ABC transporter substrate-binding protein Regulator
  HW271_RS07435 (HW271_07435) - 1520119..1521450 (-) 1332 WP_178895475.1 hemolysin family protein -
  HW271_RS07440 (HW271_07440) endA 1521569..1522396 (-) 828 WP_178895476.1 DNA/RNA non-specific endonuclease Machinery gene
  HW271_RS07445 (HW271_07445) - 1522443..1522637 (-) 195 WP_178895477.1 DNA-directed RNA polymerase subunit beta -
  HW271_RS07450 (HW271_07450) murA 1522624..1523910 (-) 1287 WP_178895478.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72393.18 Da        Isoelectric Point: 4.7815

>NTDB_id=463245 HW271_RS07425 WP_006150231.1 1517805..1519784(-) (amiA) [Streptococcus sp. oral taxon 061 strain F0704]
MKKSRILAVAGVALLATGVLAACGSSKSSNAEAPKAYGYTYTADPETLDYLISGKQSTKVATSNGIDGLFTNDQYGNLTP
AVAEDWSVSQDGLTYTYKIRKGVKWFTSDGEEYAEVTANDFVTGLKHAADNKSAALYLAQNSVKGLADYISGNNTDFSAV
GIKAVDDYTLQYTLNKPEPYWNSKLSYGIFWPLNAEFEKSKGKDFGKATDPTSLLYNGPFLLKGLTAKSSIEFAKNDQYW
DKDNVHIDTVTLSYYDGSDQESLERNFTNGAYSYARLFPTSSNYSKVAETYKDNIYYTPQGAGIAGLGVNIDRQSYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTAYSAQLNGKDGAALAVRNLFVKPDFVSAGDKTFGDLVTEKVVSYGDEWKD
VNFADAQDGLYNADKAKAELAKAKKVLEADGVKFPIHLDIPVDQTSKNYIARIQSFKQSVETALGTDNVVIDIQQITTDE
LQNATYYAASAAAEDWDLSGAVGWNPDYDDPSTYLDILKTTNSETTKSYMGYDNPSNPAVAQVGLNDYDKLVDDAASETT
DLNKRYEKYAAAQAWLTDSSLFLPAMSSSGAAPIISRVVPFSASYTQSGDKGSDVYFKYLKLQANTVTAKEYKEAREKWL
KEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=463245 HW271_RS07425 WP_006150231.1 1517805..1519784(-) (amiA) [Streptococcus sp. oral taxon 061 strain F0704]
ATGAAAAAAAGTCGGATTCTTGCGGTAGCGGGTGTTGCGCTACTTGCTACAGGTGTTCTTGCAGCTTGCGGTTCTTCAAA
ATCATCAAATGCTGAAGCACCAAAGGCTTATGGCTATACTTATACTGCTGACCCAGAAACATTGGACTACCTAATTTCTG
GTAAACAAAGTACAAAAGTTGCTACTTCAAATGGTATCGATGGTCTCTTTACAAATGACCAATATGGAAATCTAACTCCT
GCAGTCGCTGAAGACTGGTCAGTATCTCAAGATGGATTGACATATACATACAAGATTCGTAAAGGTGTAAAATGGTTCAC
ATCTGATGGTGAAGAATATGCAGAAGTAACTGCAAATGACTTTGTTACAGGTTTAAAACACGCAGCTGACAATAAATCAG
CCGCTCTTTACCTAGCACAAAATTCTGTTAAAGGATTGGCTGACTATATATCAGGGAACAATACAGACTTTTCTGCAGTA
GGTATTAAAGCTGTTGATGATTACACTCTTCAATATACATTGAACAAACCTGAACCATACTGGAACTCTAAATTATCTTA
TGGAATCTTCTGGCCTTTGAATGCAGAGTTTGAAAAATCAAAAGGTAAAGACTTTGGTAAAGCGACAGATCCAACATCAT
TGCTTTACAATGGTCCATTCTTGCTTAAGGGATTGACAGCTAAGTCTTCTATCGAATTTGCAAAGAATGATCAGTATTGG
GATAAAGACAATGTTCACATCGATACTGTAACACTTTCTTACTATGATGGTTCAGACCAAGAGTCACTTGAGCGTAACTT
TACAAATGGTGCATATAGTTATGCACGTCTCTTCCCTACTAGCTCAAACTATTCTAAAGTAGCAGAAACATATAAAGATA
ATATCTACTATACCCCACAGGGAGCTGGTATTGCTGGTTTAGGTGTTAACATTGACCGTCAAAGTTATAAATATACATCA
AAAACAACTGACGAGGAAAAGACTTCTACTAAGAAAGCTCTTCTTAACAAAGACTTCCGTCAAGCTTTGAACTTTGCTTT
TGACCGTACTGCTTATTCAGCTCAGCTAAATGGTAAGGATGGAGCCGCCCTTGCTGTTCGTAACCTCTTTGTCAAACCTG
ACTTTGTTTCTGCTGGAGATAAGACATTTGGTGACTTGGTTACTGAGAAAGTTGTTTCTTATGGTGATGAATGGAAAGAC
GTAAACTTTGCGGATGCTCAAGATGGTCTTTACAATGCTGATAAGGCTAAAGCAGAACTAGCTAAAGCTAAAAAAGTCCT
TGAAGCAGATGGTGTAAAATTCCCAATCCACTTGGATATTCCAGTTGACCAAACATCTAAAAACTATATCGCTCGTATCC
AATCATTTAAACAATCTGTTGAGACGGCTTTGGGTACAGATAATGTAGTTATCGATATTCAACAAATCACTACAGATGAA
TTACAAAATGCCACATACTACGCAGCTAGTGCGGCAGCAGAAGATTGGGACCTTTCAGGTGCTGTTGGATGGAATCCAGA
CTATGATGATCCATCAACATACCTTGATATCTTGAAAACAACTAACAGTGAAACAACTAAGTCCTACATGGGCTATGATA
ATCCATCAAACCCAGCGGTTGCTCAAGTTGGTTTGAATGATTATGACAAATTAGTTGATGATGCAGCTAGTGAAACAACC
GATCTTAATAAACGTTATGAGAAATATGCAGCAGCTCAAGCTTGGTTGACAGATAGCTCACTCTTCCTTCCAGCTATGTC
TTCTTCAGGAGCAGCACCAATCATTTCTCGCGTAGTACCATTCTCAGCATCTTATACTCAATCTGGTGATAAAGGTTCAG
ATGTTTACTTCAAATATCTTAAATTGCAAGCGAACACTGTAACTGCTAAAGAGTACAAAGAAGCTCGTGAAAAATGGCTC
AAAGAAAAAGCTGAATCAAACGAGAAAGCTCAAAAAGAATTAGCGAGCCACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5VZ51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.499

100

0.695
  amiA3 Streptococcus thermophilus LMG 18311

67.576

100

0.677
  amiA3 Streptococcus thermophilus LMD-9

67.576

100

0.677