Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   HW271_RS07420 Genome accession   NZ_CP058258
Coordinates   1516243..1517739 (-) Length   498 a.a.
NCBI ID   WP_178895474.1    Uniprot ID   -
Organism   Streptococcus sp. oral taxon 061 strain F0704     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1511243..1522739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW271_RS07400 (HW271_07400) - 1512951..1513151 (-) 201 WP_178895472.1 mechanosensitive ion channel protein MscL -
  HW271_RS07405 (HW271_07405) amiF 1513304..1514230 (-) 927 WP_178895473.1 ATP-binding cassette domain-containing protein Regulator
  HW271_RS07410 (HW271_07410) amiE 1514241..1515308 (-) 1068 WP_006150205.1 ABC transporter ATP-binding protein Regulator
  HW271_RS07415 (HW271_07415) amiD 1515317..1516243 (-) 927 WP_006150281.1 oligopeptide ABC transporter permease OppC Regulator
  HW271_RS07420 (HW271_07420) amiC 1516243..1517739 (-) 1497 WP_178895474.1 ABC transporter permease Regulator
  HW271_RS07425 (HW271_07425) amiA 1517805..1519784 (-) 1980 WP_006150231.1 peptide ABC transporter substrate-binding protein Regulator
  HW271_RS07435 (HW271_07435) - 1520119..1521450 (-) 1332 WP_178895475.1 hemolysin family protein -
  HW271_RS07440 (HW271_07440) endA 1521569..1522396 (-) 828 WP_178895476.1 DNA/RNA non-specific endonuclease Machinery gene
  HW271_RS07445 (HW271_07445) - 1522443..1522637 (-) 195 WP_178895477.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55705.13 Da        Isoelectric Point: 9.2133

>NTDB_id=463244 HW271_RS07420 WP_178895474.1 1516243..1517739(-) (amiC) [Streptococcus sp. oral taxon 061 strain F0704]
MKKYVFMRILRSLVSIFLVTTLIYTIIYTMVPRKLIFKQDTNYNKIATTADKRDNYENTVYERMGYIEYYDTKELQEKAS
SIDPSVTVDANDTNKAIYEKYIQQLGNGWTLGEFTESGQFYATREIPIFERVFKFYANLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNLNLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
NIYTRTYKSPSQADAREVANYGKGDPYTATESNYQYPSMITSSAIAGLIGLAISYAIAVPLGSAMARYKNTWIDSFSTGA
LTFLLALPTIALVYIIRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGLAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGSIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNNMVVGLVFIFTCVSIFSYLIGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=463244 HW271_RS07420 WP_178895474.1 1516243..1517739(-) (amiC) [Streptococcus sp. oral taxon 061 strain F0704]
ATGAAAAAATATGTTTTTATGCGTATCTTGCGGTCGTTAGTTTCTATCTTTTTAGTAACGACCTTGATTTACACAATCAT
CTATACGATGGTTCCACGGAAGTTGATCTTCAAACAAGATACTAACTACAATAAAATTGCAACTACAGCTGATAAACGCG
ATAACTATGAAAATACCGTTTATGAGCGTATGGGTTATATCGAATATTACGATACAAAAGAGTTGCAGGAAAAAGCTAGT
AGCATTGACCCTTCTGTTACAGTAGATGCAAATGATACAAATAAAGCTATCTATGAAAAATACATCCAACAACTTGGGAA
CGGTTGGACTTTAGGTGAGTTTACAGAGAGCGGTCAATTCTATGCTACTCGTGAAATCCCTATTTTCGAGCGTGTGTTCA
AATTCTATGCAAACTTGCTTGATATTGACCATACAAACAAGATTCAAGACCCAGAAAATCCTAACTTAGAGCGTTATTTG
CGTTTTGAAAACGATCCAGCTATTGGATGGTCTTTAGTAGGTTCAGGGACTAAACATAAATACCTCTTGTACTTCAACAG
TCAGTTCCCATTTGTTCATCAGAACTTTGTGAACTTGAACCTAGGAGATTCTTACCCAACTTATGCCAATACTCCTGTAC
TTCAAGTTATCACACAAGGTCAAGGACAAACGAAGACTTCTGAAGTTCAATTCCCAACTGGGAAGAAAACTTCATCAGTC
AATATCTACACAAGAACTTATAAATCACCAAGTCAGGCGGATGCACGTGAAGTAGCGAACTACGGTAAAGGTGATCCATA
TACAGCTACTGAAAGCAACTATCAGTATCCATCTATGATTACCAGTTCTGCTATTGCTGGTTTGATTGGCCTTGCAATTT
CGTATGCGATTGCGGTTCCACTTGGTTCTGCAATGGCTCGTTACAAGAATACTTGGATTGATAGTTTCTCTACAGGAGCT
TTAACATTCTTACTTGCTCTTCCAACTATCGCTCTTGTCTATATCATTCGTTTGATTGGTTCTTCAATTGGACTCCCTGA
TTCATTCCCTATCTTGGGTGCTGGAGACTGGCGTTCATATGTACTACCTGCAGTTATTCTTGGTTTACTTGGTGCTCCTG
GTTTGGCTATCTGGATTCGTCGTTACATGATTGACTTACAATCACAAGACTTTGTTCGTTTTGCACGTGCAAAAGGTCTT
TCTGAGAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTACCACTTGTTTCAGGTATTCCTGGTTCTATTAT
CGGTGTTATTGGTGGAGCTACTCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCGTCAAATAATAACATGGTTGTTGGTCTAGTTTTCATCTTTACTTGCGTCTCAATCTTCTCTTACTTAATTGGGGAT
ATTTGGATGACAATTATTGACCCACGTATTAAGTTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.51

100

0.775
  amiC Streptococcus thermophilus LMG 18311

77.51

100

0.775
  amiC Streptococcus thermophilus LMD-9

77.108

100

0.771