Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   HW271_RS07415 Genome accession   NZ_CP058258
Coordinates   1515317..1516243 (-) Length   308 a.a.
NCBI ID   WP_006150281.1    Uniprot ID   -
Organism   Streptococcus sp. oral taxon 061 strain F0704     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1510317..1521243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW271_RS07400 (HW271_07400) - 1512951..1513151 (-) 201 WP_178895472.1 mechanosensitive ion channel protein MscL -
  HW271_RS07405 (HW271_07405) amiF 1513304..1514230 (-) 927 WP_178895473.1 ATP-binding cassette domain-containing protein Regulator
  HW271_RS07410 (HW271_07410) amiE 1514241..1515308 (-) 1068 WP_006150205.1 ABC transporter ATP-binding protein Regulator
  HW271_RS07415 (HW271_07415) amiD 1515317..1516243 (-) 927 WP_006150281.1 oligopeptide ABC transporter permease OppC Regulator
  HW271_RS07420 (HW271_07420) amiC 1516243..1517739 (-) 1497 WP_178895474.1 ABC transporter permease Regulator
  HW271_RS07425 (HW271_07425) amiA 1517805..1519784 (-) 1980 WP_006150231.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34598.41 Da        Isoelectric Point: 9.2759

>NTDB_id=463243 HW271_RS07415 WP_006150281.1 1515317..1516243(-) (amiD) [Streptococcus sp. oral taxon 061 strain F0704]
MSTISNDKFQFVKRDDFASEAIDAPAYSYWGSVFRQFLKKKSTIIMLGILISIVLMSFIYPMFSDFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINIVIGVIVGGIWGISKSVDRVMMEVYNVISNIPHLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYSIRIQIMRYRDLEYNLASRTLGTPTYKIVIKNIMPQLVSVIVTTTSQMLPAFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=463243 HW271_RS07415 WP_006150281.1 1515317..1516243(-) (amiD) [Streptococcus sp. oral taxon 061 strain F0704]
ATGTCTACAATTAGTAATGATAAATTTCAGTTTGTAAAACGCGATGACTTTGCCTCTGAAGCAATTGATGCTCCTGCCTA
CTCATATTGGGGTTCTGTTTTTAGACAATTTTTGAAAAAGAAATCAACCATCATCATGCTTGGTATTTTGATTTCAATCG
TTTTGATGAGTTTCATCTACCCAATGTTTTCTGATTTCGACTTCAATGATGTAAGTAAGGTAAATGATTTTAGCGCTCGC
TACATTAAACCAAATGCGGAACATTGGTTCGGTACAGATAGTAATGGTAAGTCTCTTTTTGATGGTGTCTGGTTTGGAGC
CCGTAACTCTATCTTGATTTCCGTTATTGCGACCTTTATCAATATTGTAATTGGTGTTATTGTCGGCGGTATCTGGGGTA
TTTCAAAATCAGTTGACCGCGTCATGATGGAAGTTTATAACGTTATTTCCAACATCCCACACTTATTGATTGTTATCGTC
CTAACATACTCAATCGGAGCAGGTTTCTGGAATTTGATTTTTGCCATGAGTGTAACGACTTGGATTGGGATTGCCTACTC
AATTCGTATCCAAATCATGCGTTACCGTGACTTAGAGTACAACCTTGCTTCACGCACACTCGGAACTCCAACATACAAAA
TTGTCATTAAAAATATCATGCCACAATTGGTATCTGTTATTGTTACGACTACATCACAAATGCTTCCAGCATTTATCTCA
TATGAAGCCTTTCTATCATTCTTTGGACTTGGATTGCCTATTACAGTACCAAGTTTAGGTCGATTGATTTCAGATTACTC
ACAGAACGTAACAACAAATGCATACCTCTTCTGGATTCCATTGACAACTTTGGTCTTGGTATCCTTGTCACTTTTCGTAG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(122-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.792

100

0.828
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815