Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   HW271_RS07405 Genome accession   NZ_CP058258
Coordinates   1513304..1514230 (-) Length   308 a.a.
NCBI ID   WP_178895473.1    Uniprot ID   -
Organism   Streptococcus sp. oral taxon 061 strain F0704     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1508304..1519230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW271_RS07400 (HW271_07400) - 1512951..1513151 (-) 201 WP_178895472.1 mechanosensitive ion channel protein MscL -
  HW271_RS07405 (HW271_07405) amiF 1513304..1514230 (-) 927 WP_178895473.1 ATP-binding cassette domain-containing protein Regulator
  HW271_RS07410 (HW271_07410) amiE 1514241..1515308 (-) 1068 WP_006150205.1 ABC transporter ATP-binding protein Regulator
  HW271_RS07415 (HW271_07415) amiD 1515317..1516243 (-) 927 WP_006150281.1 oligopeptide ABC transporter permease OppC Regulator
  HW271_RS07420 (HW271_07420) amiC 1516243..1517739 (-) 1497 WP_178895474.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34936.09 Da        Isoelectric Point: 6.7107

>NTDB_id=463241 HW271_RS07405 WP_178895473.1 1513304..1514230(-) (amiF) [Streptococcus sp. oral taxon 061 strain F0704]
MSEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSKGDIIFDGKKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAELERYKKEIK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=463241 HW271_RS07405 WP_178895473.1 1513304..1514230(-) (amiF) [Streptococcus sp. oral taxon 061 strain F0704]
ATGTCTGAAAAATTAGTAGAAGTTAAAGACTTAGAGATTTCCTTCGGTGAAGGAAGCAAAAAGTTTGTAGCCGTTAAAAA
TGCAAACTTCTTTATCAACAAAGGCGAAACATTCTCACTTGTTGGAGAATCTGGTAGTGGTAAGACAACAATTGGTCGTG
CCATTATCGGTCTTAATGATACCAGCAAGGGAGATATCATCTTTGATGGTAAAAAAATTAATGGTAAAAAATCACGTGAA
CAAGCAGCGGAATTAATCCGTCGCATTCAAATGATTTTCCAAGACCCAGCTGCAAGTTTGAATGAACGTGCGACAGTGGA
CTATATCATCTCTGAAGGTCTTTACAACCACCATTTATTTAAAGACGAAGAAGAAAGAAAAGAAAAAGTTCAAAATATCA
TTCGTGAAGTGGGACTTTTGGCTGAACACTTAACTCGTTATCCTCATGAGTTCTCAGGTGGACAACGTCAACGTATTGGG
ATTGCCCGTGCTTTGGTTATGCAACCTGACTTCGTTATCGCGGATGAGCCAATCTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTTTTGAACTTGCTCAAGAAATTCCAAAAAGAATTGGGCTTAACCTATCTCTTTATCGCCCACGATTTGTCAGTAG
TTCGTTTTATTTCTGATCGTATCGCGGTAATTTATAAGGGTGTCATTGTAGAAGTGGCTGAAACTGAAGAATTGTTTAAC
AATCCAGTTCATCCATATACACAAGCACTTCTATCAGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAAAAAGTTTT
GAAAGTCTATGATCCAGATCAACATGACTATGAAACTGACAAACCTTCTATGGTTGAAATTCGTCCAGGACATTATGTTT
GGGCTAACCAAGCAGAATTGGAACGATATAAAAAAGAAATTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.275

99.351

0.857
  amiF Streptococcus salivarius strain HSISS4

86.275

99.351

0.857
  amiF Streptococcus thermophilus LMD-9

85.948

99.351

0.854