Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HW369_RS05925 Genome accession   NZ_CP058255
Coordinates   1148031..1149272 (+) Length   413 a.a.
NCBI ID   WP_028410856.1    Uniprot ID   -
Organism   Priestia megaterium strain BHS1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1143031..1154272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW369_RS05900 - 1144254..1144979 (+) 726 WP_195696004.1 SDR family oxidoreductase -
  HW369_RS05905 - 1145045..1145305 (+) 261 WP_013058809.1 DUF3243 domain-containing protein -
  HW369_RS05910 - 1145519..1146310 (+) 792 WP_195696005.1 DUF3388 domain-containing protein -
  HW369_RS05915 - 1146323..1147285 (+) 963 WP_244658421.1 RodZ domain-containing protein -
  HW369_RS05920 pgsA 1147430..1148014 (+) 585 WP_195696007.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HW369_RS05925 cinA 1148031..1149272 (+) 1242 WP_028410856.1 competence/damage-inducible protein A Machinery gene
  HW369_RS05930 recA 1149472..1150509 (+) 1038 WP_013058804.1 recombinase RecA Machinery gene
  HW369_RS05935 rny 1150790..1152349 (+) 1560 WP_013058803.1 ribonuclease Y -
  HW369_RS05940 - 1152431..1153228 (+) 798 WP_025750269.1 TIGR00282 family metallophosphoesterase -
  HW369_RS05945 spoVS 1153452..1153712 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44956.09 Da        Isoelectric Point: 4.9140

>NTDB_id=463127 HW369_RS05925 WP_028410856.1 1148031..1149272(+) (cinA) [Priestia megaterium strain BHS1]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRIMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADAAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTTVSGAGEVVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLYKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKDQAPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=463127 HW369_RS05925 WP_028410856.1 1148031..1149272(+) (cinA) [Priestia megaterium strain BHS1]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTACAGCTCAAACGCGTGCGGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCAGAAGCCCTTGAAAGTATTGAAGCCTATTTCAAACAGTC
AAATCGTATCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCGGCAGTGCTCCCTAATGATTACGGAA
TGGCTCCAGGTATGGGGCTTACAGTAGAGGGAAAACACTATATGCTATTTCCAGGGCCTCCAAAAGAGCTTTATCCAATG
TATGAATCGTATGGCCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGCTTTTT
CGGAATAGGAGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCACAAACCAACCCGACGATTGCGCCGCTAG
CAGGAGATGGGGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTGATGCTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTATATGGATACGAGGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCCGAAAGTTTAACCGGCGGTTTATTCAGCGAACGTTTAACAACTGTTT
CAGGTGCTGGAGAAGTTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGTTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATACAAAAC
GGATATTGGCATCGGGTTTACAGGTGTAGCTGGACCCTCCAAACAAGAAGGACATCCTGTAGGAACAGTATATATAGGGG
TAGCCTATAAAGATCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCCGGAAGCCGCCAGGGGATTCGTTCACGAACGGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAGAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.512

99.274

0.591
  cinA Streptococcus mitis NCTC 12261

46.905

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.47
  cinA Streptococcus mitis SK321

46.19

100

0.47
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.465
  cinA Streptococcus pneumoniae R6

45.714

100

0.465
  cinA Streptococcus pneumoniae D39

45.476

100

0.462
  cinA Streptococcus mutans UA159

44.634

99.274

0.443