Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV075_RS16120 Genome accession   NZ_CP056854
Coordinates   3241170..3241766 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain RHBSTW-00113     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3236170..3246766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV075_RS16105 (HV075_16105) helD 3236378..3238432 (-) 2055 WP_014907883.1 DNA helicase IV -
  HV075_RS16110 (HV075_16110) - 3238557..3239003 (+) 447 WP_002898425.1 YccF domain-containing protein -
  HV075_RS16115 (HV075_16115) yccS 3239021..3241156 (+) 2136 WP_002898422.1 YccS family putative transporter -
  HV075_RS16120 (HV075_16120) sxy/tfoX 3241170..3241766 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  HV075_RS16125 (HV075_16125) sulA 3242115..3242624 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  HV075_RS16130 (HV075_16130) ompA 3242977..3244047 (+) 1071 WP_002898408.1 porin OmpA -
  HV075_RS16135 (HV075_16135) matP 3244179..3244631 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HV075_RS16140 (HV075_16140) - 3244817..3246574 (+) 1758 WP_181586248.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=460869 HV075_RS16120 WP_004179217.1 3241170..3241766(-) (sxy/tfoX) [Klebsiella pneumoniae strain RHBSTW-00113]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=460869 HV075_RS16120 WP_004179217.1 3241170..3241766(-) (sxy/tfoX) [Klebsiella pneumoniae strain RHBSTW-00113]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51