Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   JHW37_RS08980 Genome accession   NZ_CP068238
Coordinates   1907270..1907593 (+) Length   107 a.a.
NCBI ID   WP_003150898.1    Uniprot ID   A0A2R3IP58
Organism   Pseudomonas aeruginosa strain A39-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1902270..1912593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW37_RS08965 (JHW37_08965) - 1902971..1903930 (+) 960 WP_079741086.1 UDP-glucose 4-epimerase family protein -
  JHW37_RS08970 (JHW37_08970) - 1903927..1904952 (+) 1026 WP_053816955.1 MraY family glycosyltransferase -
  JHW37_RS08975 (JHW37_08975) - 1905083..1907080 (+) 1998 WP_053816956.1 polysaccharide biosynthesis protein -
  JHW37_RS08980 (JHW37_08980) comE1/comEA 1907270..1907593 (+) 324 WP_003150898.1 ComEA family DNA-binding protein Machinery gene
  JHW37_RS08990 (JHW37_08990) - 1907811..1909007 (-) 1197 WP_012075040.1 amino acid aminotransferase -
  JHW37_RS08995 (JHW37_08995) uvrB 1909194..1911206 (+) 2013 WP_003150902.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11221.07 Da        Isoelectric Point: 6.4592

>NTDB_id=459215 JHW37_RS08980 WP_003150898.1 1907270..1907593(+) (comE1/comEA) [Pseudomonas aeruginosa strain A39-1]
MHLIKSALFLILFACLPFSASAAPAAAKPPVVATTPTEASTAEVVNINTADEATLVRGLNGVGEVKAKAIVEYRTAHGPF
VSLDQLLEVKGVGPALLEKNRERIAIE

Nucleotide


Download         Length: 324 bp        

>NTDB_id=459215 JHW37_RS08980 WP_003150898.1 1907270..1907593(+) (comE1/comEA) [Pseudomonas aeruginosa strain A39-1]
ATGCACCTAATCAAATCCGCCTTGTTCCTCATCCTGTTCGCCTGCCTGCCGTTTTCGGCTTCCGCCGCGCCGGCCGCCGC
CAAGCCTCCGGTGGTCGCGACAACGCCGACGGAGGCGTCGACAGCGGAGGTGGTCAATATCAATACGGCCGACGAGGCGA
CGCTGGTGCGTGGGTTGAATGGCGTCGGCGAGGTCAAGGCCAAGGCGATCGTCGAATACCGAACGGCTCATGGTCCGTTC
GTTTCGCTGGATCAGTTGCTGGAAGTGAAGGGCGTGGGACCGGCGTTGCTGGAGAAGAACCGGGAGCGGATCGCCATAGA
GTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(42-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3IP58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

43.689

96.262

0.421
  comEA/comE1 Glaesserella parasuis strain SC1401

42.308

97.196

0.411
  comEA Vibrio parahaemolyticus RIMD 2210633

42.268

90.654

0.383
  comEA Vibrio cholerae C6706

39.423

97.196

0.383
  comEA Vibrio cholerae strain A1552

39.423

97.196

0.383
  comEA Acinetobacter baylyi ADP1

54.054

69.159

0.374
  comEA Acinetobacter baumannii strain A118

29.323

100

0.364