Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   HVV27_RS04000 Genome accession   NZ_CP055246
Coordinates   787380..787568 (+) Length   62 a.a.
NCBI ID   WP_011528571.1    Uniprot ID   A0A660A3N3
Organism   Streptococcus pyogenes strain TSPY767     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 757685..787568 787380..787568 within 0


Gene organization within MGE regions


Location: 757685..787568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVV27_RS03820 (HVV27_03820) recJ 757685..759895 (+) 2211 WP_011528535.1 single-stranded-DNA-specific exonuclease RecJ -
  HVV27_RS03825 (HVV27_03825) - 760046..760564 (+) 519 WP_002990109.1 adenine phosphoribosyltransferase -
  HVV27_RS03830 (HVV27_03830) - 760645..761328 (+) 684 WP_011184446.1 DnaD domain-containing protein -
  HVV27_RS03835 (HVV27_03835) nth 761325..761981 (+) 657 WP_002990106.1 endonuclease III -
  HVV27_RS03840 (HVV27_03840) - 762053..762739 (+) 687 WP_002990104.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  HVV27_RS03845 (HVV27_03845) - 762729..763517 (+) 789 WP_021299315.1 Nif3-like dinuclear metal center hexameric protein -
  HVV27_RS03850 (HVV27_03850) - 763557..764663 (+) 1107 WP_219966500.1 FAD-binding oxidoreductase -
  HVV27_RS03855 (HVV27_03855) rfbA 764721..765590 (+) 870 WP_002992970.1 glucose-1-phosphate thymidylyltransferase RfbA -
  HVV27_RS03860 (HVV27_03860) - 765590..766183 (+) 594 WP_002990099.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  HVV27_RS03865 (HVV27_03865) rfbB 766427..767467 (+) 1041 WP_002984881.1 dTDP-glucose 4,6-dehydratase -
  HVV27_RS03870 (HVV27_03870) - 767550..768485 (-) 936 WP_060388510.1 site-specific integrase -
  HVV27_RS03875 (HVV27_03875) - 768632..768952 (+) 321 WP_002995960.1 VRR-NUC domain-containing protein -
  HVV27_RS03880 (HVV27_03880) - 768936..769292 (+) 357 WP_011018138.1 hypothetical protein -
  HVV27_RS09425 - 769289..769540 (+) 252 WP_011528549.1 hypothetical protein -
  HVV27_RS03885 (HVV27_03885) - 769549..769758 (+) 210 Protein_735 DUF4355 domain-containing protein -
  HVV27_RS03890 (HVV27_03890) - 769777..770667 (+) 891 WP_011528556.1 hypothetical protein -
  HVV27_RS03895 (HVV27_03895) - 770679..770972 (+) 294 WP_011528557.1 HeH/LEM domain-containing protein -
  HVV27_RS03900 (HVV27_03900) - 770986..771330 (+) 345 WP_060388512.1 hypothetical protein -
  HVV27_RS03905 (HVV27_03905) - 771327..771638 (+) 312 WP_011528559.1 hypothetical protein -
  HVV27_RS03910 (HVV27_03910) - 771635..772030 (+) 396 WP_011528560.1 hypothetical protein -
  HVV27_RS03915 (HVV27_03915) - 772032..772442 (+) 411 WP_011528561.1 DUF5072 family protein -
  HVV27_RS03920 (HVV27_03920) - 772457..772711 (+) 255 WP_231494232.1 phage major tail protein, TP901-1 family -
  HVV27_RS03925 (HVV27_03925) - 772724..773014 (+) 291 WP_060388513.1 hypothetical protein -
  HVV27_RS03930 (HVV27_03930) - 772971..774548 (+) 1578 WP_231494234.1 phage tail protein -
  HVV27_RS03935 (HVV27_03935) - 774549..776033 (+) 1485 WP_011528566.1 distal tail protein Dit -
  HVV27_RS03940 (HVV27_03940) - 776034..779483 (+) 3450 WP_011528567.1 glucosaminidase domain-containing protein -
  HVV27_RS03945 (HVV27_03945) - 779488..781350 (+) 1863 WP_011528568.1 DUF859 family phage minor structural protein -
  HVV27_RS03950 (HVV27_03950) - 781361..781708 (+) 348 WP_009880247.1 DUF1366 domain-containing protein -
  HVV27_RS09335 - 781722..781844 (+) 123 WP_015055953.1 hypothetical protein -
  HVV27_RS03955 (HVV27_03955) - 781858..782181 (+) 324 WP_015055952.1 hypothetical protein -
  HVV27_RS03960 (HVV27_03960) - 782181..782513 (+) 333 WP_011054798.1 phage holin -
  HVV27_RS03965 (HVV27_03965) - 782515..783279 (+) 765 WP_011054797.1 CHAP domain-containing protein -
  HVV27_RS03970 (HVV27_03970) - 783291..783893 (+) 603 WP_011054796.1 hypothetical protein -
  HVV27_RS03975 (HVV27_03975) - 783904..784677 (+) 774 WP_011528569.1 hypothetical protein -
  HVV27_RS03980 (HVV27_03980) - 784687..784908 (+) 222 WP_009880241.1 hypothetical protein -
  HVV27_RS03985 (HVV27_03985) - 784908..785567 (+) 660 WP_011528570.1 hypothetical protein -
  HVV27_RS03990 (HVV27_03990) - 785636..786070 (-) 435 WP_011017966.1 hypothetical protein -
  HVV27_RS03995 (HVV27_03995) sda3 786342..787142 (-) 801 WP_011285611.1 streptodornase Sda3 -
  HVV27_RS04000 (HVV27_04000) prx 787380..787568 (+) 189 WP_011528571.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7224.11 Da        Isoelectric Point: 4.0606

>NTDB_id=457159 HVV27_RS04000 WP_011528571.1 787380..787568(+) (prx) [Streptococcus pyogenes strain TSPY767]
MLTYDEFKQAIDREYITGDTVMIVRKNGQIFDYVLPHEEVRNGEVVTIERISDVMAELSESE

Nucleotide


Download         Length: 189 bp        

>NTDB_id=457159 HVV27_RS04000 WP_011528571.1 787380..787568(+) (prx) [Streptococcus pyogenes strain TSPY767]
ATGCTAACATATGACGAGTTTAAGCAAGCAATCGACCGTGAATATATCACAGGAGACACAGTTATGATCGTGCGCAAGAA
CGGACAGATTTTTGATTATGTGTTGCCGCATGAAGAAGTGAGAAATGGGGAAGTTGTGACAATCGAGCGGATATCAGATG
TTATGGCAGAACTTTCTGAGTCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A660A3N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

76.667

96.774

0.742
  prx Streptococcus pyogenes MGAS315

76.271

95.161

0.726
  prx Streptococcus pyogenes MGAS8232

76.271

95.161

0.726
  prx Streptococcus pyogenes MGAS315

71.667

96.774

0.694
  prx Streptococcus pyogenes MGAS315

90.698

69.355

0.629
  prx Streptococcus pyogenes MGAS315

85.366

66.129

0.565
  prx Streptococcus pyogenes MGAS315

76.19

67.742

0.516