Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JJB20_RS10005 Genome accession   NZ_CP067232
Coordinates   2124223..2125347 (+) Length   374 a.a.
NCBI ID   WP_000228538.1    Uniprot ID   -
Organism   Escherichia coli strain SBF45     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2119223..2130347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB20_RS09980 (JJB20_09980) mscL 2119349..2119759 (-) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -
  JJB20_RS09985 (JJB20_09985) trkA 2119889..2121265 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  JJB20_RS09990 (JJB20_09990) rsmB 2121287..2122576 (-) 1290 WP_000744779.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JJB20_RS09995 (JJB20_09995) fmt 2122622..2123569 (-) 948 WP_000004432.1 methionyl-tRNA formyltransferase -
  JJB20_RS10000 (JJB20_10000) def 2123584..2124093 (-) 510 WP_000114984.1 peptide deformylase -
  JJB20_RS10005 (JJB20_10005) dprA 2124223..2125347 (+) 1125 WP_000228538.1 DNA-protecting protein DprA Machinery gene
  JJB20_RS10010 (JJB20_10010) smg 2125319..2125792 (+) 474 WP_000460670.1 DUF494 family protein Smg -
  JJB20_RS10015 (JJB20_10015) yrdD 2125821..2126363 (+) 543 WP_001129724.1 type I DNA topoisomerase -
  JJB20_RS10020 (JJB20_10020) tsaC 2126368..2126940 (+) 573 WP_001297709.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  JJB20_RS10025 (JJB20_10025) aroE 2126945..2127763 (+) 819 WP_000451211.1 shikimate dehydrogenase -
  JJB20_RS10030 (JJB20_10030) yrdB 2127760..2128017 (+) 258 WP_001070563.1 DUF1488 domain-containing protein -
  JJB20_RS10035 (JJB20_10035) yrdA 2127993..2128547 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40955.86 Da        Isoelectric Point: 6.3122

>NTDB_id=457159 JJB20_RS10005 WP_000228538.1 2124223..2125347(+) (dprA) [Escherichia coli strain SBF45]
MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSQIDAVGLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLQATTDYPGALFVEGELHALHSFQLAIVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLAASLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=457159 JJB20_RS10005 WP_000228538.1 2124223..2125347(+) (dprA) [Escherichia coli strain SBF45]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGTATCAGCAGCTTGTACGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCAAATTGATGCGGTTGGATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCAGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCATAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACAAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGCCATGCCCGACTGGCTGCCAGTTTGCT
TGAACATGGCGGAGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTAGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.509

98.663

0.479
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

45.135

98.93

0.447
  dprA Vibrio cholerae strain A1552

45.135

98.93

0.447
  dprA Haemophilus influenzae Rd KW20

45.401

90.107

0.409
  dprA Glaesserella parasuis strain SC1401

45.133

90.642

0.409
  dprA Legionella pneumophila strain ERS1305867

44.848

88.235

0.396