Detailed information NTG0456818

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HUZ38_RS19170
• Genome accession: NZ_CP055210
• Coordinates: 3973026..3973826 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain STEFF_2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3968026..3978826

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUZ38_RS19150 (HUZ38_19125)	dksA	3968606..3969061 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
HUZ38_RS19155 (HUZ38_19130)	sfsA	3969224..3969940 (-)	717	WP_020324420.1	DNA/RNA nuclease SfsA	-
HUZ38_RS19160 (HUZ38_19135)	thpR	3969940..3970476 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
HUZ38_RS19165 (HUZ38_19140)	hrpB	3970549..3972978 (+)	2430	WP_004177388.1	ATP-dependent helicase HrpB	-
HUZ38_RS19170 (HUZ38_19145)	pilD	3973026..3973826 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
HUZ38_RS19175 (HUZ38_19150)	-	3973823..3974569 (-)	747	WP_004178605.1	type II secretion system protein N	-
HUZ38_RS19180 (HUZ38_19155)	-	3974559..3975044 (-)	486	WP_004145896.1	type II secretion system protein M	-
HUZ38_RS19185 (HUZ38_19160)	gspL	3975037..3976230 (-)	1194	WP_004194919.1	type II secretion system protein GspL	-
HUZ38_RS19190 (HUZ38_19165)	gspK	3976217..3977203 (-)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
HUZ38_RS19195 (HUZ38_19170)	gspJ	3977200..3977796 (-)	597	WP_004178612.1	type II secretion system minor pseudopilin GspJ	-
HUZ38_RS19200 (HUZ38_19175)	gspI	3977793..3978158 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
HUZ38_RS19205 (HUZ38_19180)	gspH	3978155..3978670 (-)	516	WP_004194939.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=456818 HUZ38_RS19170 WP_004145898.1 3973026..3973826(-) (pilD) [Klebsiella pneumoniae strain STEFF_2]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=456818 HUZ38_RS19170 WP_004145898.1 3973026..3973826(-) (pilD) [Klebsiella pneumoniae strain STEFF_2]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCATGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425