Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   JCR30_RS03315 Genome accession   NZ_CP067008
Coordinates   606438..606620 (+) Length   60 a.a.
NCBI ID   WP_011184907.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain iGAS426     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 601438..611620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR30_RS09710 - 601811..601933 (+) 123 WP_029713948.1 hypothetical protein -
  JCR30_RS03290 (JCR30_03290) - 601921..603126 (+) 1206 WP_200221169.1 glucosaminidase domain-containing protein -
  JCR30_RS03295 (JCR30_03295) - 603266..603790 (+) 525 WP_011017840.1 type II toxin-antitoxin system antitoxin SocA domain-containing protein -
  JCR30_RS03300 (JCR30_03300) - 603778..604644 (+) 867 WP_023077776.1 DUF334 domain-containing protein -
  JCR30_RS03305 (JCR30_03305) - 604694..605128 (-) 435 WP_011888702.1 hypothetical protein -
  JCR30_RS03310 (JCR30_03310) sda3 605400..606200 (-) 801 WP_011285611.1 streptodornase Sda3 -
  JCR30_RS03315 (JCR30_03315) prx 606438..606620 (+) 183 WP_011184907.1 hypothetical protein Regulator
  JCR30_RS03320 (JCR30_03320) rlmD 606811..608166 (+) 1356 WP_011888703.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  JCR30_RS03325 (JCR30_03325) rocA 608832..610187 (+) 1356 WP_011888704.1 transcriptional regulator RocA -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6976.99 Da        Isoelectric Point: 4.2550

>NTDB_id=456773 JCR30_RS03315 WP_011184907.1 606438..606620(+) (prx) [Streptococcus pyogenes strain iGAS426]
MLTYDEFKQAIDRGYITGDTVMIVRKNGQIFDYVLPHEKVKNGEVVTEEIVEEVMVELDK

Nucleotide


Download         Length: 183 bp        

>NTDB_id=456773 JCR30_RS03315 WP_011184907.1 606438..606620(+) (prx) [Streptococcus pyogenes strain iGAS426]
ATGCTAACATACGACGAGTTTAAACAAGCGATTGACCGTGGATATATCACAGGAGACACAGTTATGATCGTGCGTAAAAA
CGGACAGATTTTTGATTATGTTTTGCCACATGAGAAAGTAAAAAATGGAGAAGTTGTGACCGAGGAGATAGTGGAAGAAG
TGATGGTGGAATTAGACAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

85

100

0.85
  prx Streptococcus pyogenes MGAS8232

85

100

0.85
  prx Streptococcus pyogenes MGAS315

85

100

0.85
  prx Streptococcus pyogenes MGAS315

83.333

100

0.833
  prx Streptococcus pyogenes MGAS315

80

100

0.8
  prx Streptococcus pyogenes MGAS315

88.372

71.667

0.633
  prx Streptococcus pyogenes MGAS315

78.571

70

0.55