Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   IGS65_RS04870 Genome accession   NZ_CP066294
Coordinates   997055..997735 (-) Length   226 a.a.
NCBI ID   WP_002270597.1    Uniprot ID   -
Organism   Streptococcus mutans strain 27-3     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 992055..1002735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS04855 (IGS65_004855) holA 992811..993851 (-) 1041 WP_002286210.1 DNA polymerase III subunit delta -
  IGS65_RS04860 (IGS65_004860) - 994019..994645 (-) 627 WP_002264731.1 DUF805 domain-containing protein -
  IGS65_RS04865 (IGS65_004865) comEC/celB 994831..997065 (-) 2235 WP_002261915.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IGS65_RS04870 (IGS65_004870) comEA/celA/cilE 997055..997735 (-) 681 WP_002270597.1 helix-hairpin-helix domain-containing protein Machinery gene
  IGS65_RS04875 (IGS65_004875) - 997875..998627 (-) 753 WP_002267103.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  IGS65_RS04880 (IGS65_004880) - 998766..999701 (+) 936 WP_002278209.1 polysaccharide deacetylase family protein -
  IGS65_RS04885 (IGS65_004885) - 999790..1000302 (+) 513 WP_002261919.1 HXXEE domain-containing protein -
  IGS65_RS04890 (IGS65_004890) - 1000348..1001367 (+) 1020 WP_002280666.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24588.93 Da        Isoelectric Point: 8.2999

>NTDB_id=454582 IGS65_RS04870 WP_002270597.1 997055..997735(-) (comEA/celA/cilE) [Streptococcus mutans strain 27-3]
MVDEFLDKLKEKKNVFTLVGGLVVLLGLGVYFFFPSSNKQEDSLARLKEQSLQVTTKTGKESQKKTQVTTAKSTITVDIK
GAVKHEGVYTLPIDSRINDVIEKAGGFSEKADRKSVNLAQKLQDEAVIYVAAIGENISVIRDSQEGKTSQADKANTKETS
VKGKVNLNTATLADLQTISGIGEKKAQDILDYREANGGFKSVDDLKNISGIGDKTFEKLKDLVSVD

Nucleotide


Download         Length: 681 bp        

>NTDB_id=454582 IGS65_RS04870 WP_002270597.1 997055..997735(-) (comEA/celA/cilE) [Streptococcus mutans strain 27-3]
ATGGTTGACGAATTTTTAGATAAACTCAAGGAAAAGAAAAATGTTTTTACCCTAGTTGGTGGTCTTGTAGTCTTACTGGG
TCTGGGTGTTTATTTCTTTTTTCCTTCTTCCAATAAGCAGGAAGATAGTCTGGCTCGTTTAAAGGAACAATCCCTTCAGG
TAACCACAAAGACTGGCAAAGAAAGTCAGAAGAAGACGCAGGTGACGACTGCCAAATCAACAATAACTGTTGATATTAAA
GGAGCTGTTAAGCATGAGGGCGTCTATACTTTACCGATTGACAGTCGTATTAATGATGTAATAGAAAAAGCGGGAGGTTT
TTCTGAAAAGGCTGATCGCAAATCTGTTAATCTGGCTCAAAAATTACAAGACGAAGCAGTTATTTATGTGGCAGCTATTG
GTGAGAATATTAGTGTCATTAGGGATTCTCAAGAAGGTAAAACCAGTCAGGCAGATAAGGCAAATACTAAAGAAACTTCG
GTAAAAGGTAAGGTTAATCTTAATACTGCCACTTTGGCTGATTTACAGACTATTTCTGGAATCGGTGAGAAGAAAGCTCA
GGATATTCTTGATTACCGTGAAGCCAATGGAGGTTTTAAGTCAGTGGATGATTTGAAAAATATTTCAGGGATTGGCGATA
AAACATTTGAGAAGTTAAAGGATTTAGTCAGTGTTGATTAG

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(77-130)

Helix-hairpin-helix motif (HHH_3)

(163-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

42.489

100

0.438
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

42.06

100

0.434
  comEA/celA/cilE Streptococcus mitis SK321

42.241

100

0.434
  comEA/celA/cilE Streptococcus pneumoniae D39

41.631

100

0.429
  comEA/celA/cilE Streptococcus pneumoniae Rx1

41.631

100

0.429
  comEA/celA/cilE Streptococcus pneumoniae R6

41.631

100

0.429
  comEA Lactococcus lactis subsp. cremoris KW2

42.478

100

0.425
  comEA Streptococcus thermophilus LMD-9

57.143

68.142

0.389
  comEA Latilactobacillus sakei subsp. sakei 23K

35.537

100

0.381