Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   I6H78_RS07810 Genome accession   NZ_CP066059
Coordinates   1592600..1593871 (-) Length   423 a.a.
NCBI ID   WP_198459318.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1587600..1598871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS07780 (I6H78_07780) - 1588258..1588689 (-) 432 WP_198459313.1 Rrf2 family transcriptional regulator -
  I6H78_RS07785 (I6H78_07785) - 1589426..1590280 (+) 855 WP_198459314.1 AraC family transcriptional regulator -
  I6H78_RS07790 (I6H78_07790) - 1590294..1590953 (+) 660 WP_198459315.1 ABC transporter ATP-binding protein -
  I6H78_RS07795 (I6H78_07795) - 1590950..1591663 (+) 714 WP_198459316.1 ABC transporter permease -
  I6H78_RS07800 (I6H78_07800) - 1591670..1592086 (+) 417 WP_198459317.1 hypothetical protein -
  I6H78_RS07810 (I6H78_07810) rarA 1592600..1593871 (-) 1272 WP_198459318.1 replication-associated recombination protein A Machinery gene
  I6H78_RS07815 (I6H78_07815) - 1593987..1594457 (+) 471 WP_198459319.1 DUF3013 family protein -
  I6H78_RS07820 (I6H78_07820) - 1594477..1595538 (+) 1062 WP_198459320.1 site-2 protease family protein -
  I6H78_RS07825 (I6H78_07825) - 1595540..1595977 (+) 438 WP_198459321.1 NUDIX hydrolase -
  I6H78_RS07830 (I6H78_07830) - 1595974..1597419 (+) 1446 WP_198459322.1 HEPN domain-containing protein -
  I6H78_RS07835 (I6H78_07835) prmA 1597424..1598374 (+) 951 WP_198459323.1 50S ribosomal protein L11 methyltransferase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46903.40 Da        Isoelectric Point: 5.8085

>NTDB_id=453490 I6H78_RS07810 WP_198459318.1 1592600..1593871(-) (rarA) [Streptococcus oralis strain FDAARGOS_1021]
MPDNLALRMRPKTINQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEAIQ
IALTDPERGFDFPVELDDDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQNYLYPHNYPGNWIKQDYLPEKIKDQHYFTP
EDTGKYERALAQRKETIDKLRDL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=453490 I6H78_RS07810 WP_198459318.1 1592600..1593871(-) (rarA) [Streptococcus oralis strain FDAARGOS_1021]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCAAAAACCATCAACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATTATCCGTCGCATGGTGGAAGCCAATCGTCTGTCCTCCATGATTCTCTACGGACCTCCAGGTATTGGCAAGACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGGACCTTTAATGCGACAGTGGATAGTAAAAAGCGACTA
CAAGAAATCGCCGAAGAAGCTAAATTCTCTGGTGGATTGGTCCTCCTGCTAGACGAGATTCACCGACTAGATAAAACCAA
ACAAGACTTTCTACTTCCCCTCTTAGAAAGTGGTCTGGTCATCATGATTGGGGCTACGACTGAAAATCCCTTCTTTTCTG
TCACTCCAGCCATTCGCAGTCGTGTTCAGATTTTTGAACTGGAACCTTTATCTAATCAAGATGTCAAAGAAGCGATTCAA
ATCGCCCTAACTGACCCTGAACGAGGTTTTGATTTCCCAGTTGAGTTAGATGATGATGCACTGGATTTCATCGCGACCTC
TACAAATGGAGATCTGCGTTCTGCCTTTAACTCGCTGGATCTGGCTGTTCTCTCTACTCCCGAGAATGACAAAGGCATCC
GTCATATCACTCTTGATATCATGGAAAATAGCCTGCAGAGGAGTTACATTACTATGGACAAGGATGGGGACGGTCACTAC
GATGTCCTCTCAGCCCTACAAAAATCCATCCGTGGCTCGGATGTCGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTTCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCTTATGAAGATATCGGCTTGGCCAATCCTGAAGCCC
AGATCCATACTGTAACTGCTCTAGACGCTGCCCAAAAAATTGGGTTCCCAGAAGCTCGCATCCTCATTGCAAATGTGGTG
ATTGATTTGGCCCTCTCTCCAAAATCCAACTCAGCCTATGTCGCGATGGACAAGGCTCTGGCTGATCTCAAAACATCAGG
TCATTTACCCATCCCACGACACCTGCGCGATGGTCATTATAGTGGTAGCAAAGAACTGGGCAACGCGCAAAACTATCTCT
ATCCACACAACTATCCTGGAAACTGGATCAAGCAAGACTATTTGCCAGAAAAAATCAAAGACCAGCACTATTTCACTCCA
GAGGATACTGGCAAATACGAACGGGCCTTGGCGCAACGCAAGGAAACCATCGATAAATTACGAGACTTGTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.273

98.582

0.574