Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   HUF98_RS01675 Genome accession   NZ_CP054560
Coordinates   357447..357929 (+) Length   160 a.a.
NCBI ID   WP_078202465.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain YC103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352447..362929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS01665 (HUF98_01665) pilX 352750..353568 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HUF98_RS01670 (HUF98_01670) pilY1 353580..357434 (+) 3855 WP_179007487.1 PilC/PilY family type IV pilus protein Machinery gene
  HUF98_RS01675 (HUF98_01675) pilY2 357447..357929 (+) 483 WP_078202465.1 type IV pilin protein Machinery gene
  HUF98_RS01680 (HUF98_01680) pilE 357926..358351 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  HUF98_RS01685 (HUF98_01685) rpsP 358498..358749 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HUF98_RS01690 (HUF98_01690) rimM 358769..359317 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  HUF98_RS01695 (HUF98_01695) trmD 359363..360103 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HUF98_RS01700 (HUF98_01700) rplS 360311..360679 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  HUF98_RS01705 (HUF98_01705) - 360731..361672 (-) 942 WP_140951738.1 lipase family alpha/beta hydrolase -
  HUF98_RS01710 (HUF98_01710) - 361787..362818 (-) 1032 WP_133239105.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17517.75 Da        Isoelectric Point: 8.1104

>NTDB_id=453293 HUF98_RS01675 WP_078202465.1 357447..357929(+) (pilY2) [Acinetobacter baumannii strain YC103]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIEITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=453293 HUF98_RS01675 WP_078202465.1 357447..357929(+) (pilY2) [Acinetobacter baumannii strain YC103]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTGAAATTACTGATGATACGACGACAGGAAATTTATTGACAAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

97.5

100

0.975
  comE Acinetobacter baylyi ADP1

41.279

100

0.444